AMBER Archive (2008)

Subject: Re: AMBER: Installing PMEMD with Amber10

From: Atro Tossavainen (atro.tossavainen+amber_at_helsinki.fi)
Date: Fri May 30 2008 - 01:42:02 CDT

Justin,

> I am installing Amber10 on our cluster (Apple Xserve G5 nodes). The
> OS on the nodes is Yellowdog Linux. The installation of AmberTools
> and Amber10 proceeded with no problems, but I am having some difficulty
> installing PMEMD. I have installed lam-7.1.3 that came with Amber10,
> and am specifying the following:
>
> ./configure macosx_ppc gfortran lam pubfft nobintraj

If the system you're talking about is this

http://www.arc.vt.edu/arc/SystemX/

you have access to MVAPICH that runs over InfiniBand and the IBM XL
compilers... Am I missing something? 

-- 
Atro Tossavainen (Mr.)               / The Institute of Biotechnology at
Systems Analyst, Techno-Amish &     / the University of Helsinki, Finland,
+358-9-19158939  UNIX Dinosaur     / employs me, but my opinions are my own.
< URL : http : / / www . helsinki . fi / %7E atossava / > NO FILE ATTACHMENTS
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