AMBER Archive (2008)

Subject: Re: AMBER: atom type in glycam06

From: Lachele Foley (Lists) (lf.list_at_gmail.com)
Date: Wed May 21 2008 - 08:37:51 CDT

It will probably be easiest if you download a sample leaprc file from
our site. It contains all the atom types applicable to GLYCAM06. It
is best that you use the types in that file, but if you have good
reason to use different types, you can follow the syntax in the file
for assigning new ones. Be sure you have downloaded the latest prep
and parameter files, too.

http://www.glycam.com/gl_params.html

On Mon, May 19, 2008 at 1:06 PM, tinni sona <tinni.217_at_gmail.com> wrote:
> Dear all,
>
> I am trying to use GLYCAM06 in AMBER9. My system is cyclodextrin.
>
> I want to assign the atom types manually in xleap. Can anyone please help me
> how to determine the atom types for the respective system.
>
> Thanks in advance.
>
> regards,
> madhurima
> 

-- 
:-) Lachele
Lachele Foley
CCRC/UGA
2-0263
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