AMBER Archive (2004) - Jun 2004 By Author

Starting: Tue Jun 01 2004 - 02:22:14 CDT
Ending: Wed Jun 30 2004 - 20:10:02 CDT

• A. Hungie
  • AMBER: free energy (Fri Jun 04 2004 - 12:21:59 CDT)
  • AMBER: gibbs in amber8 (Fri Jun 04 2004 - 12:13:12 CDT)
• aldo jongejan
  • Re: AMBER: cluster MD conformations from sander (Fri Jun 11 2004 - 03:22:40 CDT)
• Amber admin
  • Re: AMBER: AMBPDB command requires libcxa.so.5 (Mon Jun 28 2004 - 10:12:45 CDT)
• Andreas Svrcek-Seiler
  • Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander (Wed Jun 16 2004 - 09:58:33 CDT)
  • Re: AMBER: why the enegy of native state of protein is high in GBSA calculation? (Fri Jun 04 2004 - 10:15:03 CDT)
• Andrew Box
  • AMBER: (no subject) (Sun Jun 27 2004 - 22:29:34 CDT)
• Andy Purkiss
  • Re: AMBER: image and restart problems (Tue Jun 29 2004 - 08:05:48 CDT)
• Annette Höglund
  • Re: AMBER: FEP error/early termination - why? (Tue Jun 01 2004 - 09:34:53 CDT)
• anshul_at_imtech.res.in
  • Re: AMBER: Simulated anealling (Wed Jun 09 2004 - 09:41:56 CDT)
  • Re: AMBER: Simulated anealling (Fri Jun 04 2004 - 15:56:50 CDT)
  • Re: AMBER: simulated anealling (Thu Jun 03 2004 - 11:56:58 CDT)
  • AMBER: Simulated anealling (Thu Jun 03 2004 - 09:30:42 CDT)
  • AMBER: simulated anealling (Thu Jun 03 2004 - 09:12:55 CDT)
• apw397_at_soton.ac.uk
  • Re: AMBER: question about replica exchange in amber8 (Wed Jun 02 2004 - 04:43:21 CDT)
• Ben Cossins
  • Re: AMBER: nmanal problem (Mon Jun 21 2004 - 11:40:50 CDT)
  • AMBER: nmanal problem (Mon Jun 21 2004 - 10:45:20 CDT)
• Bill Ross
  • Re: AMBER: MD & running time (Tue Jun 22 2004 - 20:48:03 CDT)
  • Re: AMBER: leap.log warnings (Mon Jun 21 2004 - 14:25:35 CDT)
  • Re: AMBER: leap.log warnings (Mon Jun 21 2004 - 12:40:13 CDT)
  • Re: AMBER: leap.log warnings (Sun Jun 20 2004 - 21:52:17 CDT)
  • Re: AMBER: The first and second derivatives (Fri Jun 18 2004 - 16:02:22 CDT)
  • Re: AMBER: Z-DNA (Thu Jun 17 2004 - 15:00:55 CDT)
  • Re: AMBER: RMSD calculations in ptraj and Carnal (Tue Jun 15 2004 - 15:55:31 CDT)
  • Re: AMBER: RMSD calculations in ptraj and Carnal (Tue Jun 15 2004 - 14:23:40 CDT)
  • Re: AMBER: Trajectory file (Wed Jun 09 2004 - 16:19:36 CDT)
  • Re: AMBER: segmentation fault when running parmchk (Tue Jun 08 2004 - 13:16:35 CDT)
  • Re: AMBER: Bad contacts (Mon Jun 07 2004 - 20:37:16 CDT)
  • Re: AMBER: Sander & fix atoms (Thu Jun 03 2004 - 16:06:04 CDT)
  • Re: AMBER: CARNAL- movement of an axis (Thu Jun 03 2004 - 15:53:47 CDT)
  • Re: AMBER: Loading mol2 Files in XLEaP (Thu Jun 03 2004 - 15:44:39 CDT)
  • RE: AMBER: Amber force field for protein-DNA system (Tue Jun 01 2004 - 13:32:52 CDT)
• Brent Krueger
  • AMBER: octavalent metal (Fri Jun 25 2004 - 16:17:01 CDT)
• bybaker_at_itsa.ucsf.edu
  • Re: AMBER: MD & running time (Tue Jun 22 2004 - 23:29:58 CDT)
  • Thanks - Re: AMBER: MD & running time (Tue Jun 22 2004 - 18:29:09 CDT)
  • AMBER: MD & running time (Tue Jun 22 2004 - 13:11:58 CDT)
  • Re: AMBER: Amber & mutation (Thu Jun 10 2004 - 11:24:24 CDT)
  • AMBER: Amber & mutation (Wed Jun 09 2004 - 19:53:58 CDT)
  • Re: AMBER: Bad contacts (Wed Jun 09 2004 - 15:30:38 CDT)
  • Re: AMBER: Bad contacts (Wed Jun 09 2004 - 12:02:01 CDT)
  • AMBER: Bad contacts (Mon Jun 07 2004 - 19:44:37 CDT)
  • Re: AMBER: Sander & fix atoms (Thu Jun 03 2004 - 17:36:24 CDT)
  • Re: AMBER: Sander & fix atoms (Thu Jun 03 2004 - 17:32:53 CDT)
  • Re: AMBER: Sander & fix atoms (Thu Jun 03 2004 - 15:59:50 CDT)
  • Re: AMBER: Sander & fix atoms (Thu Jun 03 2004 - 15:54:55 CDT)
  • AMBER: Sander & fix atoms (Thu Jun 03 2004 - 11:48:40 CDT)
• cailliez
  • AMBER: jump in temperature + problem in trajectory files (Mon Jun 28 2004 - 09:11:14 CDT)
  • AMBER: GB parameters for Calcium (Wed Jun 23 2004 - 07:39:38 CDT)
  • AMBER: Calcium and GB (Tue Jun 08 2004 - 06:38:58 CDT)
• Carlos Simmerling
  • Re: AMBER: traj. analysis (Wed Jun 30 2004 - 14:08:50 CDT)
  • Re: AMBER: GB+LES (Wed Jun 30 2004 - 06:26:59 CDT)
  • Re: AMBER: image and restart problems (Tue Jun 29 2004 - 09:57:42 CDT)
  • Re: AMBER: question about water molecule (Mon Jun 28 2004 - 12:48:11 CDT)
  • Re: AMBER: Octahedron Box (Mon Jun 28 2004 - 10:43:21 CDT)
  • Re: AMBER: free energy (Mon Jun 28 2004 - 08:06:43 CDT)
  • Re: AMBER: restraints error (Fri Jun 25 2004 - 13:19:34 CDT)
  • Re: AMBER: restraints error (Fri Jun 25 2004 - 12:23:26 CDT)
  • Re: AMBER: Units of Charges on Atoms (Thu Jun 24 2004 - 14:49:43 CDT)
  • Re: AMBER: Restrain or freeze molecule question? (Thu Jun 24 2004 - 10:39:58 CDT)
  • Re: AMBER: amber8 parallel jobs (Thu Jun 24 2004 - 07:17:05 CDT)
  • Re: AMBER: TOP file in AMBER7/8 (Mon Jun 21 2004 - 08:52:38 CDT)
  • Re: AMBER: MOIL-View question (Wed Jun 16 2004 - 15:25:45 CDT)
  • Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander (Wed Jun 16 2004 - 10:15:20 CDT)
  • Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander (Wed Jun 16 2004 - 09:42:33 CDT)
  • Re: AMBER: MOIL-View question (Wed Jun 16 2004 - 06:57:27 CDT)
  • Re: AMBER: Improper Torsional Parameters (Mon Jun 14 2004 - 16:54:57 CDT)
  • Re: AMBER: question about force field (Mon Jun 14 2004 - 11:14:18 CDT)
  • Re: AMBER: Bad contacts (Wed Jun 09 2004 - 13:56:09 CDT)
  • Re: AMBER: old trajectory file (amber6) to new trajectory file ? (Tue Jun 08 2004 - 06:37:48 CDT)
  • Re: AMBER: Bad contacts (Mon Jun 07 2004 - 20:26:19 CDT)
  • Re: AMBER: why the enegy of native state of protein is high in GBSA calculation? (Fri Jun 04 2004 - 06:52:40 CDT)
  • Re: AMBER: parallel Sander (amber8): run-time error under Irix (Thu Jun 03 2004 - 10:03:43 CDT)
• Carsten Detering
  • AMBER: bug in leap? (Mon Jun 07 2004 - 18:14:30 CDT)
• Cenk Andac
  • AMBER: Problems with processing SYBYL-Tripos pdb files in LEAP (Wed Jun 30 2004 - 10:12:10 CDT)
  • AMBER: Problems with processing SYBYL-Tripos pdb files in LEAP (Wed Jun 30 2004 - 10:14:18 CDT)
  • AMBER: AMBPDB command requires libcxa.so.5 (Sat Jun 26 2004 - 10:16:52 CDT)
  • AMBER: Problem with menu bar in LEAP (Fri Jun 25 2004 - 16:54:47 CDT)
• Chunhu Tan
  • AMBER: Questions about pert.charge and atom type change. (Wed Jun 30 2004 - 19:20:38 CDT)
  • AMBER: About TI with sander (Mon Jun 28 2004 - 14:35:54 CDT)
• Chutintorn Punwong
  • Re: AMBER: segmentation fault when running parmchk (Tue Jun 08 2004 - 13:07:45 CDT)
  • Re: AMBER: segmentation fault when running parmchk (Wed Jun 02 2004 - 14:11:22 CDT)
  • Re: AMBER: segmentation fault when running parmchk (Wed Jun 02 2004 - 12:57:06 CDT)
• darden
  • Re: AMBER: Periodic boundary simulation (Tue Jun 01 2004 - 08:11:54 CDT)
• Dat H. Nguyen
  • Re: AMBER: Problem with menu bar in LEAP (Fri Jun 25 2004 - 17:09:00 CDT)
  • Re: AMBER: Core Dump ERROR When Using TIP4P (Tue Jun 15 2004 - 16:21:28 CDT)
  • AMBER: Core Dump ERROR When Using TIP4P (Thu Jun 10 2004 - 20:12:06 CDT)
• David A. Case
  • Re: AMBER: Questions about pert.charge and atom type change. (Wed Jun 30 2004 - 20:10:02 CDT)
  • Re: AMBER: Problems with processing SYBYL-Tripos pdb files in LEAP (Wed Jun 30 2004 - 12:50:41 CDT)
  • Re: AMBER: problems in using glycam (Wed Jun 30 2004 - 10:03:07 CDT)
  • Re: AMBER: Amber 8 installation error (Tue Jun 29 2004 - 18:55:18 CDT)
  • Re: AMBER: Atom Labels (Tue Jun 29 2004 - 15:54:37 CDT)
  • Re: AMBER: Question about dummy atoms (Tue Jun 29 2004 - 12:24:56 CDT)
  • Re: AMBER: About TI with sander (Tue Jun 29 2004 - 11:45:52 CDT)
  • Re: AMBER: Test run error in amber8 : IBM-AIX (Tue Jun 29 2004 - 10:00:58 CDT)
  • Re: AMBER: Amber 8 installation error (Tue Jun 29 2004 - 09:56:53 CDT)
  • Re: AMBER: question about building prmtop and inpcrd files in xleap (Mon Jun 28 2004 - 11:02:37 CDT)
  • Re: AMBER: Amber8 compilation in IBM-AIX (Mon Jun 28 2004 - 10:42:20 CDT)
  • Re: AMBER: (no subject) (Mon Jun 28 2004 - 01:12:26 CDT)
  • Re: AMBER: "Total vdw box size" information is gone (Sun Jun 27 2004 - 16:03:39 CDT)
  • Re: AMBER: AMBPDB command requires libcxa.so.5 (Sat Jun 26 2004 - 13:56:09 CDT)
  • Re: AMBER: -p4pg problem (Sat Jun 26 2004 - 13:54:03 CDT)
  • Re: AMBER: restraints error (Fri Jun 25 2004 - 14:26:56 CDT)
  • Re: AMBER: Amber 8 installation (Fri Jun 25 2004 - 14:15:50 CDT)
  • Re: AMBER: restraints error (Fri Jun 25 2004 - 12:32:48 CDT)
  • Re: AMBER: Born radii (Fri Jun 25 2004 - 10:36:20 CDT)
  • Re: RE: AMBER: Amber 8 installation (Fri Jun 25 2004 - 10:33:30 CDT)
  • Re: AMBER: Restrain or freeze molecule question? (Thu Jun 24 2004 - 10:24:37 CDT)
  • Re: AMBER: MD & running time (Wed Jun 23 2004 - 16:02:45 CDT)
  • Re: AMBER: GB parameters for Calcium (Wed Jun 23 2004 - 13:10:23 CDT)
  • Re: AMBER: Problems in Amber MPI version (64 bits machine) (Wed Jun 23 2004 - 12:58:07 CDT)
  • Re: AMBER: Box range in vacuum when restart MD (Wed Jun 23 2004 - 11:06:29 CDT)
  • Re: AMBER: Problems in Amber MPI version (64 bits machine) (Tue Jun 22 2004 - 19:31:25 CDT)
  • Re: AMBER: nmanal problem (Mon Jun 21 2004 - 10:51:59 CDT)
  • Re: AMBER: leap.log warnings (Mon Jun 21 2004 - 10:43:07 CDT)
  • Re: AMBER: solvate proteins in xleap/amber8 (Mon Jun 21 2004 - 10:42:47 CDT)
  • Re: AMBER: Changing MAXPR in Amber 8? (Fri Jun 18 2004 - 15:34:43 CDT)
  • Re: AMBER: The first and second derivatives (Fri Jun 18 2004 - 15:25:29 CDT)
  • Re: AMBER: Could not assign parameters (Fri Jun 18 2004 - 14:04:57 CDT)
  • Re: AMBER: Deeper problem with the energetics of the system (Fri Jun 18 2004 - 13:20:20 CDT)
  • Re: AMBER: The first and second derivatives (Fri Jun 18 2004 - 13:18:34 CDT)
  • Re: AMBER: Using gibbs to calculate free energy (Fri Jun 18 2004 - 10:14:55 CDT)
  • Re: AMBER: Nmode (Thu Jun 17 2004 - 10:14:26 CDT)
  • Re: AMBER: Nmode (Wed Jun 16 2004 - 23:20:10 CDT)
  • Re: AMBER: problems with extra points (Wed Jun 16 2004 - 13:50:05 CDT)
  • Re: AMBER: binary files (Wed Jun 16 2004 - 09:44:39 CDT)
  • Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander (Wed Jun 16 2004 - 09:40:32 CDT)
  • Re: AMBER: DENSITY in constant pressure MD (Tue Jun 15 2004 - 17:50:57 CDT)
  • Re: AMBER: The parallel problem for umbrella sampling in Amber 8 (Tue Jun 15 2004 - 17:55:20 CDT)
  • Re: AMBER: Core Dump ERROR When Using TIP4P (Tue Jun 15 2004 - 17:28:36 CDT)
  • Re: AMBER: About umbrella sampling in Amber 8 (Tue Jun 15 2004 - 11:05:59 CDT)
  • Re: AMBER: Config file for installing Amber 8 on PC with Windows XP (Mon Jun 14 2004 - 20:01:57 CDT)
  • Re: AMBER: Improper Torsional Parameters (Mon Jun 14 2004 - 16:20:21 CDT)
  • Re: AMBER: parmcal problem (Fri Jun 11 2004 - 17:37:53 CDT)
  • Re: AMBER: segmentation fault when running parmchk (Fri Jun 11 2004 - 10:00:13 CDT)
  • Re: AMBER: Core Dump ERROR When Using TIP4P (Fri Jun 11 2004 - 09:08:18 CDT)
  • Re: AMBER: old trajectory file (amber6) to new trajectory file ? (Wed Jun 09 2004 - 21:16:26 CDT)
  • Re: AMBER: Calcium and GB (Wed Jun 09 2004 - 21:10:26 CDT)
  • Re: AMBER: Amber Transition State Output (Wed Jun 09 2004 - 20:54:23 CDT)
  • Re: AMBER: Amber Transition State Output (Wed Jun 09 2004 - 17:55:14 CDT)
  • Re: AMBER: xleap solvatebox problem (Wed Jun 09 2004 - 17:51:06 CDT)
  • Re: AMBER: Constant Pressure Problem of MD (Mon Jun 07 2004 - 21:12:41 CDT)
  • Re: AMBER: gibbs in amber8 (Sat Jun 05 2004 - 22:33:37 CDT)
  • Re: AMBER: why the enegy of native state of protein is high in GBSA calculation? (Fri Jun 04 2004 - 08:00:47 CDT)
  • Re: AMBER: amber8 compile on Lemieux (Thu Jun 03 2004 - 21:39:58 CDT)
  • Re: AMBER: Simulated anealling (Thu Jun 03 2004 - 21:34:17 CDT)
  • Re: AMBER: confusion about epsilon=4r for nmode calclation of nucleic acid (Thu Jun 03 2004 - 21:31:06 CDT)
  • Re: AMBER: Loading mol2 Files in XLEaP (Thu Jun 03 2004 - 17:02:07 CDT)
  • Re: AMBER: segmentation fault when running parmchk (Wed Jun 02 2004 - 13:41:56 CDT)
  • Re: AMBER: sander of AMBER 8 doesn't work (Wed Jun 02 2004 - 09:47:20 CDT)
  • Re: AMBER: Free energy in Amber8 (Wed Jun 02 2004 - 09:35:24 CDT)
  • Re: [pradipta_b@mail.jnu.ac.in: AMBER: Software to visualize normal modes!] (Tue Jun 01 2004 - 18:24:54 CDT)
  • Re: AMBER: sander8 performance (Tue Jun 01 2004 - 15:15:50 CDT)
  • Re: AMBER: Amber7: pdb format file (Tue Jun 01 2004 - 14:23:47 CDT)
  • Re: AMBER: sander8 performance (Tue Jun 01 2004 - 14:22:29 CDT)
  • Re: AMBER: Heme parameters (Tue Jun 01 2004 - 14:20:56 CDT)
  • Re: AMBER: Free energy in Amber8 (Tue Jun 01 2004 - 14:17:34 CDT)
  • Re: AMBER: Amber force field for protein-DNA system (Tue Jun 01 2004 - 13:40:15 CDT)
• David E. Konerding DSD Staff
  • Re: AMBER: MOIL-View question (Wed Jun 16 2004 - 17:30:47 CDT)
• david.evans_at_ulsop.ac.uk
  • AMBER: PARSE radius for P (Thu Jun 10 2004 - 12:59:30 CDT)
• Difei Wang
  • AMBER: old trajectory file (amber6) to new trajectory file ? (Mon Jun 07 2004 - 21:55:39 CDT)
  • AMBER: mm_pbsa test problem (Wed Jun 02 2004 - 10:54:40 CDT)
• Dr. Rainer Glaser
  • AMBER: unnatural base - RESP charges in ANTECHAMBER (Mon Jun 07 2004 - 19:12:56 CDT)
• Dr. Yong Duan
  • Re: AMBER: all_amino03.in discrepancy (Mon Jun 21 2004 - 11:41:03 CDT)
• Fang, Jianwen
  • RE: AMBER: questions on mm_pbsa (Fri Jun 11 2004 - 09:59:18 CDT)
  • AMBER: mm_pbsa.pl question (Thu Jun 03 2004 - 12:14:29 CDT)
• fangyu liang
  • Re: RE: AMBER: Amber 8 installation (Fri Jun 25 2004 - 02:34:45 CDT)
  • Re: AMBER: Amber 8 installation error (Tue Jun 29 2004 - 17:52:29 CDT)
  • Re: AMBER: Amber 8 installation error (Tue Jun 29 2004 - 17:31:28 CDT)
  • AMBER: Amber 8 installation error (Tue Jun 29 2004 - 02:00:32 CDT)
  • RE: AMBER: Amber 8 installation (Fri Jun 25 2004 - 13:03:06 CDT)
  • AMBER: Amber 8 installation (Thu Jun 24 2004 - 17:24:43 CDT)
  • AMBER: Config file for installing Amber 8 on PC with Windows XP (Mon Jun 14 2004 - 18:21:07 CDT)
• Feng, Hanqiao (NIH/NCI)
  • RE: AMBER: sander of AMBER 8 doesn't work (Wed Jun 02 2004 - 07:45:01 CDT)
  • AMBER: sander of AMBER 8 doesn't work (Tue Jun 01 2004 - 13:39:56 CDT)
• Filip Lankas
  • AMBER: NEC and Regatta (Mon Jun 28 2004 - 06:47:26 CDT)
• FyD
  • Re: AMBER: Problems with X.R.E.D. (Fri Jun 25 2004 - 12:20:30 CDT)
  • Re: AMBER: unnatural base - RESP charges in ANTECHAMBER (Tue Jun 08 2004 - 11:23:46 CDT)
  • Re: AMBER: Amber7: (Thu Jun 03 2004 - 15:11:28 CDT)
  • Re: AMBER: Loading mol2 Files in XLEaP (Thu Jun 03 2004 - 14:18:26 CDT)
  • Re: AMBER: Loading mol2 Files in XLEaP (Thu Jun 03 2004 - 11:26:38 CDT)
• Gabbar Daaku
  • AMBER: Amber8 compilation problems on AIX (Tue Jun 29 2004 - 21:50:13 CDT)
• German Sciaini
  • Re: AMBER: Atom Labels (Wed Jun 30 2004 - 06:36:14 CDT)
  • AMBER: problems to run ptraj (Tue Jun 22 2004 - 17:29:36 CDT)
  • Re: AMBER: leap.log warnings (Tue Jun 22 2004 - 05:50:01 CDT)
  • Re: AMBER: problems with extra points (Fri Jun 18 2004 - 06:08:18 CDT)
  • AMBER: problems with extra points (Wed Jun 16 2004 - 11:29:45 CDT)
• Golebiowski Jerome
  • AMBER: savepdb vs ambpdb (Fri Jun 11 2004 - 10:17:40 CDT)
• Grace Li
  • AMBER: traj. analysis (Wed Jun 30 2004 - 14:05:07 CDT)
• Guanglei Cui
  • Re: AMBER: Questions about pert.charge and atom type change. (Wed Jun 30 2004 - 19:54:28 CDT)
  • Re: AMBER: N-terminal Arg charges in ff99 not 1.00 (Wed Jun 30 2004 - 16:13:55 CDT)
  • Re: AMBER: About TI with sander (Mon Jun 28 2004 - 14:46:52 CDT)
  • Re: AMBER: Trajectory file (Wed Jun 09 2004 - 15:27:16 CDT)
  • Re: AMBER: How to neutralize system? (Wed Jun 09 2004 - 09:58:37 CDT)
  • Re: AMBER: antechamber (Wed Jun 09 2004 - 09:05:02 CDT)
  • Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 (Tue Jun 08 2004 - 14:45:56 CDT)
  • Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 (Tue Jun 08 2004 - 13:30:05 CDT)
  • Re: AMBER: amber8 compile on Lemieux (Thu Jun 03 2004 - 22:56:13 CDT)
  • Re: AMBER: Loading mol2 Files in XLEaP (Thu Jun 03 2004 - 14:20:26 CDT)
  • AMBER: amber8 compile on Lemieux (Thu Jun 03 2004 - 10:06:21 CDT)
  • Re: AMBER: Add Hydrogen bond through xLeap? (Wed Jun 02 2004 - 09:06:47 CDT)
  • Re: AMBER: question about replica exchange in amber8 (Wed Jun 02 2004 - 08:58:32 CDT)
• Guillaume Bollot
  • AMBER: Restrain or freeze molecule question? (Thu Jun 24 2004 - 05:48:33 CDT)
  • AMBER: AMBER7 update force field (Thu Jun 24 2004 - 08:23:44 CDT)
  • AMBER: AMBER7 : update force field gaff.dat and parm99.dat (Thu Jun 24 2004 - 07:48:39 CDT)
• Gustavo Pierdominici Sottile
  • AMBER: Heme parameters (Tue Jun 01 2004 - 10:32:06 CDT)
• Haijun Yang
  • Re: AMBER: Problems in Amber MPI version (64 bits machine) (Wed Jun 23 2004 - 12:33:49 CDT)
  • AMBER: Problems in Amber MPI version (64 bits machine) (Tue Jun 22 2004 - 16:57:07 CDT)
• Helios Chen
  • AMBER: "Total vdw box size" information is gone (Sun Jun 27 2004 - 02:57:50 CDT)
• ian gould
  • Re: AMBER: Opteron-64bit work station (Mon Jun 21 2004 - 11:34:33 CDT)
• Ilyas Yildirim
  • AMBER: About DelPhi and GRASP (Wed Jun 02 2004 - 23:10:07 CDT)
• J. Zhang, Dr
  • Re: Re: AMBER: why the enegy of native state of protein is high in GBSA calculation? (Sat Jun 05 2004 - 20:25:20 CDT)
  • AMBER: why the enegy of native state of protein is high in GBSA calculation? (Fri Jun 04 2004 - 04:21:20 CDT)
  • Re: AMBER: question about replica exchange in amber8 (Wed Jun 02 2004 - 21:16:19 CDT)
  • AMBER: question about replica exchange in amber8 (Wed Jun 02 2004 - 04:24:24 CDT)
• James W. Caldwell
  • Re: AMBER: xleap solvatebox problem (Wed Jun 09 2004 - 17:49:07 CDT)
• javier perez
  • AMBER: About Hbond calculations using ptraj (Mon Jun 28 2004 - 12:43:37 CDT)
• Jiayun
  • RE: AMBER: a question on MM-PBSA and Delphi (Tue Jun 29 2004 - 04:54:46 CDT)
  • RE: AMBER: a question on MM-PBSA and Delphi (Wed Jun 23 2004 - 13:00:17 CDT)
  • AMBER: a question on MM-PBSA and Delphi (Wed Jun 23 2004 - 08:34:31 CDT)
• Jiten
  • Re: AMBER: Test run error in amber8 : IBM-AIX (Tue Jun 29 2004 - 20:19:43 CDT)
  • AMBER: Test run error in amber8 : IBM-AIX (Tue Jun 29 2004 - 07:16:48 CDT)
  • Re: AMBER: Amber8 compilation in IBM-AIX (Mon Jun 28 2004 - 19:48:25 CDT)
  • Re: AMBER: Amber8 compilation in IBM-AIX (Mon Jun 28 2004 - 09:39:02 CDT)
  • Re: AMBER: "Total vdw box size" information is gone (Mon Jun 28 2004 - 09:45:39 CDT)
  • AMBER: Amber8 compilation in IBM-AIX (Mon Jun 28 2004 - 04:19:42 CDT)
  • Re: AMBER: simulated anealling (Wed Jun 02 2004 - 23:02:00 CDT)
  • Re: AMBER: Re: AMBER (Wed Jun 02 2004 - 20:48:37 CDT)
  • AMBER: Gaussian Interface ? (Wed Jun 02 2004 - 10:06:12 CDT)
  • Re: AMBER: Free energy in Amber8 (Tue Jun 01 2004 - 20:02:40 CDT)
  • Re: AMBER: Periodic boundary simulation (Tue Jun 01 2004 - 05:14:59 CDT)
  • AMBER: Free energy in Amber8 (Tue Jun 01 2004 - 05:11:54 CDT)
• Joachim Reichelt
  • AMBER: ifort -parallel (Fri Jun 11 2004 - 04:15:58 CDT)
• John
  • AMBER: MMPBSA problem (Thu Jun 03 2004 - 11:09:05 CDT)
• John Mongan
  • Re: AMBER: Software to visualize normal modes! (Tue Jun 01 2004 - 18:20:38 CDT)
• Johnson Agbo
  • AMBER: Units of Charges on Atoms (Thu Jun 24 2004 - 14:22:49 CDT)
  • Re: AMBER: The first and second derivatives (Fri Jun 18 2004 - 16:31:15 CDT)
  • Re: AMBER: The first and second derivatives (Fri Jun 18 2004 - 14:05:25 CDT)
  • AMBER: The first and second derivatives (Fri Jun 18 2004 - 13:08:49 CDT)
  • Re: AMBER: Improper Torsional Parameters (Thu Jun 17 2004 - 15:57:08 CDT)
  • AMBER: Improper Torsional Parameters (Mon Jun 14 2004 - 15:41:12 CDT)
  • Re: AMBER: Amber Transition State Output (Fri Jun 11 2004 - 00:28:05 CDT)
  • Re: AMBER: Amber Transition State Output (Wed Jun 09 2004 - 19:33:58 CDT)
  • AMBER: Amber Transition State Output (Wed Jun 09 2004 - 14:46:03 CDT)
• Joseph Nachman
  • Re: AMBER: traj. analysis (Wed Jun 30 2004 - 16:44:43 CDT)
  • Re: AMBER: RMSD calculations in ptraj and Carnal (Mon Jun 21 2004 - 10:07:57 CDT)
  • Re: AMBER: MOIL-View question (Wed Jun 16 2004 - 15:22:07 CDT)
  • Re: AMBER: RMSD calculations in ptraj and Carnal (Wed Jun 16 2004 - 15:16:52 CDT)
  • Re: AMBER: MOIL-View question (Wed Jun 16 2004 - 14:35:17 CDT)
  • Re: AMBER: RMSD calculations in ptraj and Carnal (Tue Jun 15 2004 - 14:37:18 CDT)
  • AMBER: RMSD calculations in ptraj and Carnal (Tue Jun 15 2004 - 13:24:38 CDT)
  • AMBER: MOIL-View question (Tue Jun 15 2004 - 13:11:30 CDT)
  • AMBER: Trajectory file (Wed Jun 09 2004 - 14:22:45 CDT)
• Junmei Wang
  • RE: AMBER: Restrain or freeze molecule question? (Thu Jun 24 2004 - 12:44:03 CDT)
  • Re: AMBER: unnatural base - RESP charges in ANTECHAMBER (Mon Jun 07 2004 - 20:22:31 CDT)
• jz7_at_duke.edu
  • AMBER: question about water molecule (Mon Jun 28 2004 - 12:34:19 CDT)
  • AMBER: question about building prmtop and inpcrd files in xleap (Mon Jun 28 2004 - 09:49:39 CDT)
  • RE: AMBER: question about xleap (Thu Jun 03 2004 - 14:40:10 CDT)
  • Re: AMBER: question about xleap (Thu Jun 03 2004 - 13:34:03 CDT)
  • AMBER: question about xleap (Thu Jun 03 2004 - 12:19:27 CDT)
  • AMBER: Amber force field for protein-DNA system (again) (Wed Jun 02 2004 - 12:31:56 CDT)
  • AMBER: Amber force field for protein-DNA system (again) (Tue Jun 01 2004 - 14:51:59 CDT)
  • AMBER: Amber force field for protein-DNA system (Tue Jun 01 2004 - 11:14:16 CDT)
• Karl N. Kirschner
  • Re: AMBER: problems in using glycam (Wed Jun 30 2004 - 10:29:37 CDT)
  • AMBER: Atom Labels (Tue Jun 29 2004 - 15:36:22 CDT)
• Karol Miaskiewicz
  • AMBER: Re: parallel Sander (amber8): run-time error under Irix (Tue Jun 08 2004 - 15:30:38 CDT)
  • AMBER: Re: parallel Sander (amber8): run-time error under Irix (Tue Jun 08 2004 - 15:04:14 CDT)
  • Re: AMBER: parallel Sander (amber8): run-time error under Irix (Thu Jun 03 2004 - 14:15:05 CDT)
  • Re: AMBER: parallel Sander (amber8): run-time error under Irix (Thu Jun 03 2004 - 10:29:06 CDT)
  • AMBER: parallel Sander (amber8): run-time error under Irix (Thu Jun 03 2004 - 09:42:25 CDT)
• Kazuo Koyano
  • Re: AMBER: free energy (Mon Jun 28 2004 - 03:45:41 CDT)
  • Re: AMBER: PBCAL in mm-pbsa calculation (Mon Jun 21 2004 - 01:14:56 CDT)
• Kristina Furse
  • RE: AMBER: MD & running time (Wed Jun 23 2004 - 14:53:13 CDT)
• lei jia
  • Re: AMBER: paramitrization problem (Tue Jun 08 2004 - 12:45:02 CDT)
  • RE: AMBER: paramitrization problem (Tue Jun 08 2004 - 10:00:11 CDT)
  • AMBER: paramitrization problem (Mon Jun 07 2004 - 17:12:37 CDT)
• Linda Prengaman
  • Re: AMBER: MD & running time (Tue Jun 22 2004 - 14:12:00 CDT)
  • AMBER: Checking Results? (Thu Jun 10 2004 - 20:49:33 CDT)
  • Re: AMBER: LINMIN failure (Thu Jun 10 2004 - 16:41:46 CDT)
• Lubos Vrbka
  • Re: AMBER: -p4pg problem (Sat Jun 26 2004 - 09:42:55 CDT)
  • Re: AMBER: -p4pg problem (Sat Jun 26 2004 - 05:59:53 CDT)
• Luis Gracia
  • Re: AMBER: RMSD calculations in ptraj and Carnal (Tue Jun 15 2004 - 19:19:53 CDT)
• Marcin Krol
  • AMBER: GB+LES (Wed Jun 30 2004 - 04:43:27 CDT)
  • AMBER: Born radii (Fri Jun 25 2004 - 06:24:48 CDT)
  • Re: AMBER: How to neutralize system? (Wed Jun 09 2004 - 09:57:11 CDT)
• Marek Dynowski
  • AMBER: POPE membrane, How to obtain prep and parm files? (Sat Jun 12 2004 - 12:07:08 CDT)
• Matheus Froeyen
  • AMBER: antechamber (Wed Jun 09 2004 - 02:39:26 CDT)
• Mengjuei Hsieh
  • Re: AMBER: Compiling Amber8 on Mac OS X (Fri Jun 11 2004 - 17:59:14 CDT)
  • Re: AMBER: Compiling Amber8 on Mac OS X (Thu Jun 10 2004 - 16:11:24 CDT)
• Michael Dolan
  • AMBER: N-terminal Arg charges in ff99 not 1.00 (Wed Jun 30 2004 - 16:08:15 CDT)
• Miguel
  • Re: AMBER: Periodic boundary simulation (Tue Jun 01 2004 - 06:14:34 CDT)
  • Re: AMBER: Free energy in Amber8 (Tue Jun 01 2004 - 06:11:39 CDT)
• Mizuguchi Mineyuki
  • Re: AMBER: LINMIN failure (Thu Jun 10 2004 - 21:58:24 CDT)
  • AMBER: LINMIN failure (Wed Jun 09 2004 - 21:40:16 CDT)
• Nan Lin
  • AMBER: nmode with mm/pbsa (Wed Jun 09 2004 - 20:18:15 CDT)
  • AMBER: antechamber/parmchk ATTN: needs revision (Wed Jun 09 2004 - 13:48:55 CDT)
  • AMBER: Partial Charge on ligand for MD & MM/PBSA (Mon Jun 07 2004 - 21:11:25 CDT)
  • AMBER: Constant Pressure Problem of MD (Mon Jun 07 2004 - 21:04:23 CDT)
  • AMBER: Add Hydrogen bond through xLeap? (Wed Jun 02 2004 - 01:25:18 CDT)
• Nicolas Grima
  • Re: AMBER: Amber8 compilation problems on AIX (Wed Jun 30 2004 - 02:12:19 CDT)
  • Re: AMBER: Amber8 compilation in IBM-AIX (Mon Jun 28 2004 - 10:13:32 CDT)
  • Re: AMBER: Amber8 compilation in IBM-AIX (Mon Jun 28 2004 - 05:55:59 CDT)
• nlxc
  • Re: AMBER: PBCAL in mmpbsa (Tue Jun 29 2004 - 19:29:51 CDT)
  • AMBER: PBCAL in mmpbsa (Tue Jun 29 2004 - 13:17:25 CDT)
  • AMBER: PBCAL in MM/PBSA (Fri Jun 25 2004 - 14:09:19 CDT)
  • AMBER: Deeper problem with the energetics of the system (Fri Jun 18 2004 - 12:56:52 CDT)
  • AMBER: DENSITY in constant pressure MD (Tue Jun 15 2004 - 13:17:41 CDT)
  • AMBER: Suface area parameter for fluorine in MM/PBSA (Fri Jun 11 2004 - 18:38:30 CDT)
  • AMBER: PBCAL in mm-pbsa calculation (Fri Jun 11 2004 - 12:26:21 CDT)
• Oliver Hucke
  • Re: AMBER: free energy (Fri Jun 04 2004 - 14:19:25 CDT)
  • Re: AMBER: sander8 performance (Tue Jun 01 2004 - 14:46:06 CDT)
  • AMBER: sander8 performance (Tue Jun 01 2004 - 12:53:46 CDT)
• Peter Gannett
  • Re: AMBER: Amber7: pdb format file (Tue Jun 01 2004 - 13:22:32 CDT)
• Pradipta Bandyopadhyay
  • AMBER: High B-factor!! (Tue Jun 22 2004 - 07:13:09 CDT)
• Rhonda Torres
  • Re: AMBER: nmode with mm/pbsa (Thu Jun 10 2004 - 13:33:40 CDT)
  • Re: AMBER: simulated anealling (Thu Jun 03 2004 - 13:05:58 CDT)
  • Re: AMBER: Amber force field for protein-DNA system (Tue Jun 01 2004 - 12:24:57 CDT)
• richard dimelow
  • AMBER: binary files (Wed Jun 16 2004 - 08:29:48 CDT)
• Robert Duke
  • Re: AMBER: NEC and Regatta (Mon Jun 28 2004 - 07:38:27 CDT)
  • Re: AMBER: NEC and Regatta (Mon Jun 28 2004 - 07:18:24 CDT)
  • Re: AMBER: MD & running time (Wed Jun 23 2004 - 17:25:27 CDT)
• Robyn Ayscue
  • RE: AMBER: Changing MAXPR in Amber 8? (Fri Jun 18 2004 - 15:03:06 CDT)
  • AMBER: Changing MAXPR in Amber 8? (Fri Jun 18 2004 - 14:08:13 CDT)
  • Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander (Thu Jun 17 2004 - 10:35:34 CDT)
  • AMBER: Trouble running molecular dynamics with an increase in temp in Sander (Wed Jun 16 2004 - 08:43:05 CDT)
  • Re: AMBER: Compiling Amber8 on Mac OS X (Mon Jun 14 2004 - 13:41:15 CDT)
  • Re: AMBER: Compiling Amber8 on Mac OS X (Mon Jun 14 2004 - 13:39:27 CDT)
  • AMBER: Compiling Amber8 on Mac OS X (Thu Jun 10 2004 - 07:25:40 CDT)
  • Re: AMBER: LINMIN failure (Thu Jun 10 2004 - 06:52:07 CDT)
  • Re: AMBER: Loading mol2 Files in XLEaP (Fri Jun 04 2004 - 13:24:05 CDT)
  • Re: AMBER: Loading mol2 Files in XLEaP (Thu Jun 03 2004 - 13:39:37 CDT)
  • AMBER: Loading mol2 files in XLEaP (Thu Jun 03 2004 - 11:17:54 CDT)
  • AMBER: Loading mol2 Files in XLEaP (Thu Jun 03 2004 - 11:14:00 CDT)
• Ross Walker
  • RE: AMBER: N-terminal Arg charges in ff99 not 1.00 (Wed Jun 30 2004 - 16:26:22 CDT)
  • RE: AMBER: Amber 8 installation error (Tue Jun 29 2004 - 18:08:21 CDT)
  • RE: AMBER: Problem with menu bar in LEAP (Fri Jun 25 2004 - 17:12:13 CDT)
  • RE: RE: AMBER: Amber 8 installation (Fri Jun 25 2004 - 12:27:23 CDT)
  • RE: AMBER: Amber 8 installation (Thu Jun 24 2004 - 17:38:57 CDT)
  • RE: AMBER: MD & running time (Tue Jun 22 2004 - 22:51:28 CDT)
  • RE: AMBER: Changing MAXPR in Amber 8? (Fri Jun 18 2004 - 14:23:33 CDT)
  • RE: AMBER: LINMIN failure (Fri Jun 11 2004 - 01:10:23 CDT)
  • RE: AMBER: LINMIN failure (Thu Jun 10 2004 - 12:10:08 CDT)
  • RE: AMBER: xleap solvatebox problem (Wed Jun 09 2004 - 17:48:12 CDT)
  • RE: AMBER: paramitrization problem (Tue Jun 08 2004 - 12:31:10 CDT)
  • RE: AMBER: bug in leap? (Mon Jun 07 2004 - 18:50:10 CDT)
  • RE: AMBER: paramitrization problem (Mon Jun 07 2004 - 17:24:15 CDT)
  • RE: AMBER: question about xleap (Thu Jun 03 2004 - 14:19:55 CDT)
  • RE: AMBER: question about xleap (Thu Jun 03 2004 - 13:03:04 CDT)
  • RE: AMBER: sander of AMBER 8 doesn't work (Tue Jun 01 2004 - 13:56:29 CDT)
  • RE: AMBER: Amber7: pdb format file (Tue Jun 01 2004 - 13:49:31 CDT)
  • RE: AMBER: Amber force field for protein-DNA system (Tue Jun 01 2004 - 13:09:37 CDT)
• sachin patil
  • Re: AMBER: Problem with menu bar in LEAP (Sun Jun 27 2004 - 12:01:30 CDT)
  • AMBER: Opteron-64bit work station (Mon Jun 21 2004 - 11:18:16 CDT)
• scopio
  • AMBER: Box range in vacuum when restart MD (Wed Jun 23 2004 - 08:22:31 CDT)
  • Re: AMBER: leap.log warnings (Tue Jun 22 2004 - 19:54:37 CDT)
  • AMBER: leap.log warnings (Sun Jun 20 2004 - 20:18:40 CDT)
  • AMBER: question about force field (Mon Jun 14 2004 - 10:05:57 CDT)
  • Re: AMBER: parmcal problem (Thu Jun 10 2004 - 19:21:30 CDT)
  • AMBER: parmcal problem (Thu Jun 10 2004 - 09:46:11 CDT)
  • AMBER: How to neutralize system? (Wed Jun 09 2004 - 09:47:44 CDT)
• Scott
  • AMBER: Problems with X.R.E.D. (Fri Jun 25 2004 - 10:49:24 CDT)
• Scott Brozell
  • Re: AMBER: Suface area parameter for fluorine in MM/PBSA (Sun Jun 13 2004 - 03:05:02 CDT)
  • Re: AMBER: ifort -parallel (Fri Jun 11 2004 - 10:36:36 CDT)
  • Re: AMBER: bug in leap? (Thu Jun 10 2004 - 23:32:24 CDT)
  • Re: AMBER: Xleap (Thu Jun 10 2004 - 15:36:25 CDT)
  • Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 (Tue Jun 08 2004 - 13:11:15 CDT)
  • Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 (Tue Jun 08 2004 - 12:53:34 CDT)
  • Re: AMBER: Loading mol2 Files in XLEaP (Thu Jun 03 2004 - 16:49:13 CDT)
  • Re: AMBER: Install Amber8 under cygwin (Tue Jun 01 2004 - 02:22:14 CDT)
• sebnem
  • Re: AMBER: Nmode (Thu Jun 17 2004 - 00:30:54 CDT)
  • AMBER: Nmode (Wed Jun 16 2004 - 18:47:18 CDT)
• Seonah Kim
  • AMBER: Octahedron Box (Mon Jun 28 2004 - 10:30:34 CDT)
• Shan, Jufang
  • AMBER: xleap solvatebox problem (Thu Jun 10 2004 - 09:49:25 CDT)
  • AMBER: xleap solvatebox problem (Wed Jun 09 2004 - 17:17:59 CDT)
• Sichun Yang
  • AMBER: newer OPLS/AA? (Mon Jun 21 2004 - 18:23:03 CDT)
• SIVA
  • Re: AMBER: Constant Pressure Problem of MD (Mon Jun 07 2004 - 22:53:39 CDT)
• Sivanesan Dakshanamurthy
  • Re: AMBER: Could not assign parameters (Fri Jun 18 2004 - 14:35:32 CDT)
  • AMBER: Could not assign parameters (Fri Jun 18 2004 - 13:52:18 CDT)
• Soon
  • AMBER: Periodic boundary simulation (Tue Jun 01 2004 - 04:08:31 CDT)
• spookie
  • AMBER: problem not with sander, but with mpich (Mon Jun 28 2004 - 04:08:37 CDT)
  • Re: AMBER: -p4pg problem (Sun Jun 27 2004 - 00:19:33 CDT)
  • Re: AMBER: -p4pg problem (Sat Jun 26 2004 - 09:00:48 CDT)
  • AMBER: -p4pg problem (Sat Jun 26 2004 - 03:34:40 CDT)
  • Re: AMBER: sander in parallel, amber8 (Fri Jun 25 2004 - 13:26:58 CDT)
  • Re: AMBER: amber8 parallel jobs (Fri Jun 25 2004 - 13:05:23 CDT)
  • RE: AMBER: Amber 8 installation (Fri Jun 25 2004 - 13:08:21 CDT)
  • AMBER: sander in parallel, amber8 (Fri Jun 25 2004 - 03:49:30 CDT)
  • Re: AMBER: amber8 parallel jobs (Fri Jun 25 2004 - 08:42:09 CDT)
  • Re: AMBER: Amber 8 installation (Thu Jun 24 2004 - 17:42:40 CDT)
  • AMBER: amber8 parallel jobs (Wed Jun 23 2004 - 23:50:48 CDT)
• Stef
  • Re: AMBER: sander in parallel, amber8 (Fri Jun 25 2004 - 13:11:09 CDT)
• Stefano.Pieraccini_at_unimi.it
  • AMBER: cluster analysis (Wed Jun 09 2004 - 06:19:40 CDT)
• Steve Seibold
  • AMBER: image and restart problems (Tue Jun 29 2004 - 07:56:52 CDT)
• Sue Heavner
  • Re: AMBER: cluster analysis (Thu Jun 10 2004 - 05:40:56 CDT)
• Sébastien Osborne
  • AMBER: Question about dummy atoms (Tue Jun 29 2004 - 12:16:30 CDT)
• Thomas E. Cheatham, III
  • Re: AMBER: About Hbond calculations using ptraj (Wed Jun 30 2004 - 13:11:05 CDT)
  • Re: AMBER: RMSD calculations in ptraj and Carnal (Tue Jun 15 2004 - 15:06:38 CDT)
• Thomas Steinbrecher
  • Re: AMBER: PBCAL in mmpbsa (Tue Jun 29 2004 - 15:50:43 CDT)
  • Re: AMBER: PBCAL in MM/PBSA (Fri Jun 25 2004 - 14:37:07 CDT)
  • RE: AMBER: a question on MM-PBSA and Delphi (Wed Jun 23 2004 - 13:09:16 CDT)
  • Re: AMBER: a question on MM-PBSA and Delphi (Wed Jun 23 2004 - 10:13:48 CDT)
  • Re: AMBER: PBCAL in mm-pbsa calculation (Fri Jun 11 2004 - 14:53:21 CDT)
  • Re: AMBER: PBCAL in mm-pbsa calculation (Fri Jun 11 2004 - 13:00:17 CDT)
• Tim Meyer
  • Re: AMBER: Amber & mutation (Thu Jun 10 2004 - 00:14:11 CDT)
  • Re: AMBER: cluster analysis (Wed Jun 09 2004 - 08:28:15 CDT)
• Ting Wang
  • AMBER: TOP file in AMBER7/8 (Mon Jun 21 2004 - 08:32:25 CDT)
  • AMBER: solvate proteins in xleap/amber8 (Mon Jun 21 2004 - 08:20:03 CDT)
• Tomas Kubar
  • Re: AMBER: Units of Charges on Atoms (Thu Jun 24 2004 - 14:48:36 CDT)
  • Re: AMBER: solvate proteins in xleap/amber8 (Tue Jun 22 2004 - 02:44:54 CDT)
  • Re: AMBER: xleap solvatebox problem (Thu Jun 10 2004 - 03:58:51 CDT)
  • Re: AMBER: bug in leap? (Tue Jun 08 2004 - 02:27:30 CDT)
• Tru Huynh
  • AMBER: sander7 on quad opteron (Thu Jun 03 2004 - 13:13:39 CDT)
• Venkata S Koppuravuri
  • Re: AMBER: restraints error (Fri Jun 25 2004 - 13:11:20 CDT)
  • AMBER: restraints error (Fri Jun 25 2004 - 12:10:35 CDT)
• Vidit Kumar
  • AMBER: Amber7: (Thu Jun 03 2004 - 14:55:21 CDT)
  • AMBER: Re: AMBER (Wed Jun 02 2004 - 20:19:08 CDT)
  • AMBER: Amber7: pdb format file (Tue Jun 01 2004 - 13:13:03 CDT)
• Viktor Hornak
  • Re: AMBER: Atom Labels (Tue Jun 29 2004 - 15:53:41 CDT)
  • Re: AMBER: problem not with sander, but with mpich (Mon Jun 28 2004 - 07:48:51 CDT)
  • Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 (Tue Jun 08 2004 - 14:30:38 CDT)
  • Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 (Tue Jun 08 2004 - 13:29:29 CDT)
  • Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 (Tue Jun 08 2004 - 12:35:51 CDT)
  • Re: AMBER: Sander & fix atoms (Thu Jun 03 2004 - 16:14:10 CDT)
  • Re: AMBER: parallel Sander (amber8): run-time error under Irix (Thu Jun 03 2004 - 14:01:40 CDT)
  • Re: AMBER: question about xleap (Thu Jun 03 2004 - 12:31:23 CDT)
  • Re: AMBER: Sander & fix atoms (Thu Jun 03 2004 - 12:22:55 CDT)
• Vojtech Klusak
  • Re: AMBER: all_amino03.in discrepancy (Mon Jun 21 2004 - 04:36:09 CDT)
• Wen Li
  • AMBER: cluster MD conformations from sander (Thu Jun 10 2004 - 14:13:14 CDT)
  • AMBER: CARNAL RMS (Mon Jun 07 2004 - 10:25:28 CDT)
  • AMBER: CARNAL- movement of an axis (Thu Jun 03 2004 - 15:34:11 CDT)
• Wen-Chi Tseng
  • AMBER: problems in using glycam (Wed Jun 30 2004 - 06:12:22 CDT)
• xhu1_at_memphis.edu
  • AMBER: question about building initial structure (Mon Jun 07 2004 - 12:19:13 CDT)
• Xiaobing Tian
  • Re: AMBER: Thank you (Thu Jun 10 2004 - 14:37:37 CDT)
  • Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 (Tue Jun 08 2004 - 14:21:39 CDT)
  • Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0 (Tue Jun 08 2004 - 13:33:43 CDT)
  • AMBER: Compile xleap (amber8) in linux Red Hat 8.0 (Tue Jun 08 2004 - 11:00:06 CDT)
• xiaolin cheng
  • Re: AMBER: question about replica exchange in amber8 (Wed Jun 02 2004 - 09:23:30 CDT)
• xiaowei li
  • AMBER: Z-DNA (Thu Jun 17 2004 - 13:43:13 CDT)
  • Re: AMBER: confusion about epsilon=4r for nmode calclation of nucleic acid (Thu Jun 03 2004 - 21:52:16 CDT)
  • AMBER: confusion about epsilon=4r for nmode calclation of nucleic acid (Wed Jun 02 2004 - 22:15:29 CDT)
• Xin Hu
  • AMBER: RED (Tue Jun 01 2004 - 18:02:37 CDT)
• Xioling Chuang
  • AMBER: Using gibbs to calculate free energy (Fri Jun 18 2004 - 08:15:31 CDT)
  • AMBER: water BOX (Mon Jun 07 2004 - 09:09:33 CDT)
• YangPeng
  • AMBER: Xleap (Thu Jun 10 2004 - 03:49:02 CDT)
• Ye Mei
  • AMBER: information PROTON_INFO (Thu Jun 03 2004 - 22:33:30 CDT)
• Yongzhi Chen
  • AMBER: A problem about a sander parallel run (Thu Jun 24 2004 - 13:40:37 CDT)
• Yuhui Cheng
  • AMBER: The parallel problem for umbrella sampling in Amber 8 (Tue Jun 15 2004 - 16:14:07 CDT)
  • AMBER: About umbrella sampling in Amber 8 (Mon Jun 14 2004 - 20:45:44 CDT)
• Yusuf Abdulghani
  • Re: AMBER: Compiling Amber8 on Mac OS X (Fri Jun 11 2004 - 17:14:12 CDT)

Last message date: Thu May 05 2005 - 14:26:38 CDT
Archived on: Thu May 05 2005 - 14:30:03 CDT