AMBER Archive (2004)

Subject: Re: AMBER: Amber 8 installation

From: spookie (rooksin_at_yahoo.co.uk)
Date: Thu Jun 24 2004 - 17:42:40 CDT

hi liang (if i can call u so...),
     the first warning message about the pre-existence
of the exe directory can be ignored..it is thrown out
when you try to re-install amber after an unsuccessful
attempt..in some cases, it some other cases also, it
may be possible..nothing to worry about that..

> /usr/bin/ld: /usr/lib/crt1.o: No such file: No such
> file or directory

this message generally means that the installation
script is unable to find the library files
required..do a simple locate command on your system to
find the path of the file crt1.o and then append the
path to the $PATH variable...

for eg. if your crt1.o is present in /usr/lib, make
sure /usr/lib is present in your $PATH variable..if
not, export $PATH variable again so that /usr/lib is
appended to it this time..

hope this helps you..please let me know about your
success/failure...

regards,

--- fangyu liang <fliang_at_usc.edu> wrote: > Hi,
>
> I am installing Amber 8 on a PC with latest Linux
> (SuSe 9.1) and Intel f90 compiler. Everything is
> fine until I run 'make serial'. Here is the entire
> message:
>
> Starting installation of Amber8 (serial) at Thu Jun
> 24 14:31:44 PDT 2004.
>
> mkdir ../exe
>
> mkdir: cannot create directory '../exe': File exists
>
> make: [serial] Error 1 (ignored)
>
> cd lib; make install
>
> make[1]: Entering directory
> '/home/owner/Desktop/amber8/src/lib'
>
> ifort -o new2oldparm new2oldparm.o nxtsec.o
>
> /usr/bin/ld: /usr/lib/crt1.o: No such file: No such
> file or directory
>
> make[1]: *** [new2oldparm] Error 1
>
> make[1]: Leaving directory
> '/home/owner/Desktop/amber8/src/lib'
>
> make: *** [serial] Error 2
>
> I used 'make serial -i' later on and tested it in
> the $AMBERHOME/test directory. Here is the message:
>
> cd dmp; ./Run.dmp
> .../../exe/sander: Command not found.
> ./Run.dmp: Program error
> make: *** [test.sander.no_lmod] Error 1
>
> Can someone please tell me what I did wrong? So I
> can have Amber8 working properly. Thank you very
> much!
>
> Sincerely,
>
> Fangyu Liang
>
>
>
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