AMBER Archive (2004)

Subject: AMBER: Loading mol2 Files in XLEaP

From: Robyn Ayscue (
Date: Thu Jun 03 2004 - 11:14:00 CDT

Hi! I'm using Amber 8 on an SGI machine running Irix
6.5, and I've been having a bit of trouble with xLEaP
regarding the "loadmol2" command mentioned in the
manual. I've tried to load a file by entering the
following commands:

variable = loadmol2 "test.mol2"

variable = loadmol2 test.mol2

loadmol2 test.mol2

With each of them I get "syntax error" back from the
program, and the file fails to load. The file is
located in the same directory I'm running the program
from. Also, if it makes any difference, the file is a
canonical B-conformation T:A 15-residue
oligonucleotide (DNA). Has anyone else had this
problem? If so, how did you fix it? Any help would be

Robyn Ayscue

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