AMBER Archive (2004)

Subject: Re: AMBER: cluster analysis

From: Sue Heavner (sheavner_at_hsc.wvu.edu)
Date: Thu Jun 10 2004 - 05:40:56 CDT

Stefano:

MOIL-View is a program designed to allow the user to view and analyze
molecular structures and dynamics. It is capable of performing cluster
analyses and reads Amber crd and top files or pdbs. The program is
available via the internet, with full FORTRAN source code (using SGI GL)
and documentation provided. Versions are available for Silicon Graphics
workstations. The address is:
http://morita.chem.sunysb.edu/~carlos/moil-view.html

Sue Heavner

>>> Stefano.Pieraccini_at_unimi.it 06/09/04 7:19 AM >>>
Dear all,

I would like to know if it is possible to perform
cluster analysis, for example based on RMSD of the
structures in the trajectory files, with some
component of AMBE7. If it is not the case, what
software could be able to rad the amber format
trajectory files and is in general in your opinion
advisable?

Thank you in advance

Stefano Pieraccini

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