AMBER Archive (2004)

Subject: AMBER: amber8 parallel jobs

From: spookie (
Date: Wed Jun 23 2004 - 23:50:48 CDT

dear all,
     i have a sixteen node p4 1.5GHz linux cluster
running RHL 9 on them. i have installed amber8
recently on my server and have cross mounted it on to
all other nodes. i could successfully compile amber8
in parallel mode after facing some problems with
shared libraries of the icc and ifort compilers..:)
but now, when i am trying to run the benchmarks given
with the amber package, the job fails to run on the
nodes specified. it doesnot even throw any errors. a
temporary file with the process id of the job is
created, in which, when i try to run the job on 2
processors, it lists the server's hostname twice,
instead of taking up the hostnames i've specified in
my machinefile..where could the problem be !?...any
help would be greatly appreciated...
thanks in anticipation...

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