AMBER Archive (2004)

Subject: AMBER: How to neutralize system?

From: scopio (scopio_at_163.com)
Date: Wed Jun 09 2004 - 09:47:44 CDT

Dear Amber Users:

I have a system contains many hetero atoms and had managed producing
parameters with antechamber. I found the unperturbed charge is not zero
  but -7.994000. After I added Na+ to the system by addions command,
the charge is still not zero with the value of -0.994000. I'm not sure
the charge would does matter to my MD process but I think it's safe to
neutralize the system. Any helps would be very appreciated!

Best!

Liu

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