AMBER Archive (2004)

Subject: AMBER: sander7 on quad opteron

From: Tru Huynh (tru_at_pasteur.fr)
Date: Thu Jun 03 2004 - 13:13:39 CDT

Hi,

On a 4x AMD 848 (2.2GHz) Celestica machine with 4x4x512MB of RAM,
running CentOS-3.1 build2 + update2 (RHEL3 clone).

compilers:
[tru_at_quadri2 ~]$ gcc -v
Reading specs from /opt/gnu/gcc-3.4.0/lib/gcc/x86_64-unknown-linux-gnu/3.4.0/specs
Configured with: /home/Bis/tru/src/gcc-3.4.0/configure --prefix=/opt/gnu/gcc-3.4.0 --disable-multilib
Thread model: posix
gcc version 3.4.0
[tru_at_quadri2 ~]$ /usr/bin/gcc -v
Reading specs from /usr/lib/gcc-lib/x86_64-redhat-linux/3.2.3/specs
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --host=x86_64-redhat-linux
Thread model: posix
gcc version 3.2.3 20030502 (Red Hat Linux 3.2.3-34)

MPI: LAM-MPI(7.0.6) et MPICH(1.2.5.2).

[tru_at_quadri2 /]$ uname -a
Linux XXXXXXXXXXX.pasteur.fr 2.4.21-15.EL.c0smp #1 SMP Wed May 26 12:04:40 EDT 2004 x86_64 x86_64 x86_64 GNU/Linux

AMBER | gcc-3.2.3/LAM | gcc3.2.3/MPICH| gcc-3.4.0/LAM | gcc3.4.0/MPICH|
-------------------------------------------------------------------------
 1 | 735 | 729 | 709 | 701
 2 | 386 | 391 | 357 | 367
 4 | 199 | 201 | 186 | 192

Nonsetup wallclock (time in seconds)

Tru 

-- 
Dr Tru Huynh          | http://www.pasteur.fr/recherche/unites/Binfs/
mailto:tru_at_pasteur.fr | tel/fax +33 1 45 68 87 37/19
Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France  
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