AMBER Archive (2004)

Subject: Re: AMBER: Amber & mutation

From: bybaker_at_itsa.ucsf.edu
Date: Thu Jun 10 2004 - 11:24:24 CDT

('binary' encoding is not supported, stored as-is) Hello, Tim,

Thank you for the suggestions. I will try them with MD.

Best Reagrds

Bo Yang

On Thu, 10 Jun 2004 07:14:11 +0200 Tim Meyer wrote:

> > imin=1, ncyc=250, maxcyc=500, ntb=0,
> > they do, energy minimization supposes to fix the bad contacts, and
> result
> > to changed helix structure? Or the current structure modeling methods
>
> in 500 steps minimization you won't find any structural changes. run a
> md, a nanosecond or so, and see what happens. you should also run a
> control md of your 'wild type' helix
>
> tim
>

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