AMBER Archive (2004)

Subject: Re: [pradipta_b@mail.jnu.ac.in: AMBER: Software to visualize normal modes!]

From: David A. Case (case_at_scripps.edu)
Date: Tue Jun 01 2004 - 18:24:54 CDT

> >
> > > What is the best freeware to visualize the vectors
> > > from quasi-harmomic or normal mode analysis using
> > > quasih or nmode? I have AMBER 7. IED seems to read
> > > ptraj generated modes - can it be used for quasih
> > > generated modes?

The file format for ptraj and for nmode/quasih are the same. So IED should
be able to do what you want.

...good luck...dac

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