AMBER Archive (2004)

Subject: Re: AMBER: MOIL-View question

From: Carlos Simmerling (carlos_at_csb.sunysb.edu)
Date: Wed Jun 16 2004 - 06:57:27 CDT

I haven't had trouble using trajectories from either sander
or ptraj, but I've never tried carnal output.

1) does the original (non-carnal) trajectory work?
2) try viewing the trajectory and checking to make sure
the format is ok. The trajectory format is given on the
AMBER web site.

carlos

----- Original Message -----
From: "Joseph Nachman" <nachman_at_hera.med.utoronto.ca>
To: <amber_at_scripps.edu>
Sent: Tuesday, June 15, 2004 2:11 PM
Subject: AMBER: MOIL-View question

> hello all -
>
> I'm trying to visualize a trajectory generated by Carnal (Amber6 version)
> in MOIL-View.9.1. However, when I try to load the trajectory I get a
> message that the file is not in AMBER format, although it is in AMBER
> trajectory format and it works when I used it in either Carnal or ptraj.
> The file contains no periodic box info. Any ideas?
>
> Thanks in advance,
>
> Joseph
>
> --
> --------------------------------------------------------------------
> Joseph Nachman Department of Biochemistry
> nachman_at_hera.med.utoronto.ca University of Toronto
> Medical Sciences Building
> tel: +1 416 978-5510 Toronto, Ontario M5S 1A8
> fax: +1 416 978-8548 Canada
> --------------------------------------------------------------------
>
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