AMBER Archive (2004)

Subject: Re: AMBER: Loading mol2 Files in XLEaP

From: FyD (
Date: Thu Jun 03 2004 - 14:18:26 CDT

Quoting Robyn Ayscue <>:

> Thanks for your help. I checked the mol2 files I have
> and they all contain the @<TRIPOS>SUBSTRUCTURE tag.
> The "Syntax error" I keep getting sounds like XLEaP
> doesn't like they way I'm entering the command, but
> I've typed it verbatim to what you provided in your
> example, which is the same as what's in the manual.
> Does anything other than mis-typed commands provoke a
> "syntax error" in XLEaP?

I do not know.

Did you try to load a PDB file instead of a Tripos file in xleap. Do you have
the same problem ?

M = loadpdb M.pdb

Can you send me your Tripos file ? I could try it on my system.

Regards, Francois
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