AMBER Archive (2004)

Subject: AMBER: cluster MD conformations from sander

From: Wen Li (liw_at_wadsworth.org)
Date: Thu Jun 10 2004 - 14:13:14 CDT

Dear Amber Users and Developers,

In this website,
http://web.njit.edu/all_topics/Prog_Lang_Docs/html/amber7/polyA-polyT/analysis.html
I read: 'The clustering option is currently weak.I don't advise it.'

I wonder what is the best available program now for clustering
conformations based on a sander MD trajectory, and if AMBER7 has included
a program for this purpose.

Thanks,
Wen

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