AMBER Archive (2004)

Subject: Re: AMBER: cluster MD conformations from sander

From: aldo jongejan (jongejan_at_few.vu.nl)
Date: Fri Jun 11 2004 - 03:22:40 CDT

You could try using NMRCLUST (I don't have the
URL at hand, but that should be easy to locate using
a search engine). It works very well!

greetings,

aldo

Wen Li wrote:

> Dear Amber Users and Developers,
>
> In this website,
> http://web.njit.edu/all_topics/Prog_Lang_Docs/html/amber7/polyA-polyT/analysis.html
> I read: 'The clustering option is currently weak.I don't advise it.'
>
> I wonder what is the best available program now for clustering
> conformations based on a sander MD trajectory, and if AMBER7 has included
> a program for this purpose.
>
> Thanks,
> Wen
>
>
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