AMBER Archive (2004)

Subject: AMBER: Loading mol2 files in XLEaP

From: Robyn Ayscue (kajsicat_at_yahoo.com)
Date: Thu Jun 03 2004 - 11:17:54 CDT

Hi! I'm using Amber 8 on an SGI machine running Irix
6.5, and I've been having a bit of trouble with xLEaP
regarding the "loadmol2" command mentioned in the
manual. I've tried to load a file by entering the
following commands:

variable = loadmol2 "test.mol2"

variable = loadmol2 test.mol2

loadmol2 test.mol2

With each of them I get "syntax error" back from the
program, and the file fails to load. The file is
located in the same directory I'm running the program
from, but even if I include the path with the filename
I get the same error message. Also, if it makes any
difference, the file is a canonical B-conformation T:A
15-residue oligonucleotide (DNA). Has anyone else had
this problem? If so, how did you fix it? Any help
would be appreciated.

Sincerely,
Robyn Ayscue

        
                
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