AMBER Archive (2004)

Subject: Re: AMBER: About Hbond calculations using ptraj

From: Thomas E. Cheatham, III (cheatham_at_chpc.utah.edu)
Date: Wed Jun 30 2004 - 13:11:05 CDT

> HBOND SUMMARY:
>
> I would like to take into account all the intra-residue interactions. How can
> I include these interactions??

Add the "includeself" keyword to the hbond command.

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