AMBER Archive (2004)

Subject: RE: AMBER: Amber 8 installation

From: spookie (rooksin_at_yahoo.co.uk)
Date: Fri Jun 25 2004 - 13:08:21 CDT

you might do it in two ways liang..one is to include
the path of the exe folder of amber to the $PATH
variable and the other is copying symbolic links of
all the binaries in the exe directory into
/usr/bin...in detail...it would be...

1. export PATH=$PATH:$AMBERHOME/exe
or
2. cd /usr/bin
   cp -s -f $AMBERHOME/exe/* .

hope this helps !!
regards,

--- fangyu liang <fliang_at_usc.edu> wrote: > Hi,
>
> I fixed the bug in my Intel compiler ifortvars.sh
> file(it was a PATH bug). I ran 'make test -i',
> everything passed, except one error message for the
> 'tleap':
>
> cd leap; ./Run.tleap
> Error: ./tleap -> ../../exe/teleap does not exist
> make: ***[test.leap] Error 1
>
> Please tell me how to fix this. Thank you very
> much!
>
> Sincerely,
>
> Fangyu
> P.S Professor Case, Thank you very much
>
> ----- Original Message -----
> From: "David A. Case" <case_at_scripps.edu>
> Date: Friday, June 25, 2004 8:33 am
> Subject: Re: RE: AMBER: Amber 8 installation
>
> > On Fri, Jun 25, 2004, fangyu liang wrote:
> > >
> > > ../../exe/sander: error while loading shared
> libraries: libcxa.so.5: cannot
> > > open shared object file: No such file or
> diectory
> >
> > Have you executed the "ifortvars.sh" (or
> "ifortvars.csh") script? This sets
> > up the correct LD_LIBRARY_PATH. Some people have
> claimed that it may also
> > help to update /etc/ld.so.conf, althouth that has
> not be necessary for me.
> >
> > Can you compile and run other fortran programs?
> >
> > ...good luck...dac
> >
> >
>
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