AMBER Archive (2007) - May 2007 By DateMost recent messages
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Starting: Tue May 01 2007 - 12:21:22 CDT
Ending: Thu May 31 2007 - 18:59:25 CDT
- AMBER: mm-pbsa error with nm = 1 Hayden Eastwood (Tue May 01 2007 - 12:21:22 CDT)
- Re: AMBER: mm-pbsa error with nm = 1 Urszula Uciechowska (Tue May 01 2007 - 12:43:28 CDT)
- Re: AMBER: mm-pbsa error with nm = 1 Cenk Andac (Tue May 01 2007 - 18:58:17 CDT)
- AMBER: Problem with SCC-DFTB parameter files ÇÑÀç¹ü (Tue May 01 2007 - 23:55:03 CDT)
- AMBER: Steered MD & Jarzynski's equality James W (Wed May 02 2007 - 01:44:20 CDT)
- Re: AMBER: Steered MD & Jarzynski's equality Adrian Roitberg (Wed May 02 2007 - 02:26:30 CDT)
- Re: AMBER: Steered MD & Jarzynski's equality James W (Wed May 02 2007 - 04:44:28 CDT)
- AMBER: Group declaration question cristian obiol (Wed May 02 2007 - 04:28:19 CDT)
- RE: AMBER: mm-pbsa error with nm = 1 Hayden Eastwood (Wed May 02 2007 - 05:36:55 CDT)
- RE: AMBER: mm-pbsa error with nm = 1 Cenk Andac (Wed May 02 2007 - 05:50:47 CDT)
- RE: AMBER: mm-pbsa error with nm = 1 Hayden Eastwood (Wed May 02 2007 - 06:10:10 CDT)
- Re: AMBER: Steered MD & Jarzynski's equality Gustavo Seabra (Wed May 02 2007 - 06:37:51 CDT)
- Re: AMBER: Problem with SCC-DFTB parameter files Gustavo Seabra (Wed May 02 2007 - 06:46:58 CDT)
- RE: AMBER: mm-pbsa error with nm = 1 Cenk Andac (Wed May 02 2007 - 07:55:55 CDT)
- Re: AMBER: Steered MD & Jarzynski's equality David Mobley (Wed May 02 2007 - 09:39:23 CDT)
- RE: AMBER: Problem with SCC-DFTB parameter files Ross Walker (Wed May 02 2007 - 09:45:07 CDT)
- Re: AMBER: Problem with SCC-DFTB parameter files M. L. Dodson (Wed May 02 2007 - 09:59:02 CDT)
- Re: AMBER: Problem with SCC-DFTB parameter files Gustavo Seabra (Wed May 02 2007 - 10:27:00 CDT)
- Re: AMBER: Group declaration question Bill Ross (Wed May 02 2007 - 14:10:23 CDT)
- AMBER: command line alternatives for teLeap Neelanjana Sengupta (Wed May 02 2007 - 23:21:07 CDT)
- Re: AMBER: Steered MD & Jarzynski's equality wang (Thu May 03 2007 - 03:06:43 CDT)
- AMBER: md output file deepti nayar (Thu May 03 2007 - 04:06:24 CDT)
- AMBER: Potential of mean force, how to calculate rate of dissociation? Catein Catherine (Thu May 03 2007 - 04:46:27 CDT)
- Re: AMBER: md output file Gustavo Seabra (Thu May 03 2007 - 06:32:56 CDT)
- distance constraint [Was: Re: AMBER: Steered MD & Jarzynski's equality] Gustavo Seabra (Thu May 03 2007 - 06:53:33 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? Jerome.GOLEBIOWSKI_at_unice.fr (Thu May 03 2007 - 08:57:32 CDT)
- Re: AMBER: command line alternatives for teLeap David A. Case (Thu May 03 2007 - 09:30:00 CDT)
- Re: AMBER: Problem with calcpka.pl and constant pH David A. Case (Thu May 03 2007 - 12:13:50 CDT)
- AMBER: DivCon calculation in Amber9 Wang, Xuelin (Thu May 03 2007 - 14:51:35 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? David Mobley (Thu May 03 2007 - 17:17:31 CDT)
- AMBER: Chemical shift: simulation vs. experiment Mingfeng Yang (Thu May 03 2007 - 20:07:05 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? Catein Catherine (Thu May 03 2007 - 21:13:55 CDT)
- Re: AMBER: Chemical shift: simulation vs. experiment Mingfeng Yang (Fri May 04 2007 - 00:16:30 CDT)
- Re: AMBER: Chemical shift: simulation vs. experiment Adrian Roitberg (Fri May 04 2007 - 01:42:55 CDT)
- Re: AMBER: Chemical shift: simulation vs. experiment Mingfeng Yang (Fri May 04 2007 - 02:17:04 CDT)
- Re: AMBER: Chemical shift: simulation vs. experiment Mingfeng Yang (Fri May 04 2007 - 02:52:48 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? Jerome.GOLEBIOWSKI_at_unice.fr (Fri May 04 2007 - 03:06:17 CDT)
- AMBER: Tutorial 3: MM-PBSA.....implicit solvent for MD calculations? Catein Catherine (Fri May 04 2007 - 03:13:44 CDT)
- AMBER: Rate of Dissociation Catein Catherine (Fri May 04 2007 - 04:37:46 CDT)
- AMBER: B or E Dihedral Labels in RDPARM output Mark Williamson (Fri May 04 2007 - 09:04:17 CDT)
- AMBER: Average PDB - Unusual Bonds Seth Lilavivat (Fri May 04 2007 - 09:12:25 CDT)
- RE: AMBER: Average PDB - Unusual Bonds Hayden Eastwood (Fri May 04 2007 - 09:45:01 CDT)
- Re: AMBER: B or E Dihedral Labels in RDPARM output Thomas Cheatham III (Fri May 04 2007 - 10:24:07 CDT)
- RE: AMBER: Average PDB - Unusual Bonds Ross Walker (Fri May 04 2007 - 10:29:36 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? Thomas Steinbrecher (Fri May 04 2007 - 10:49:03 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? David Mobley (Fri May 04 2007 - 12:39:34 CDT)
- Re: AMBER: Rate of Dissociation David Mobley (Fri May 04 2007 - 12:41:51 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? Thomas Steinbrecher (Fri May 04 2007 - 13:05:09 CDT)
- Re: AMBER: Rate of Dissociation Sean Rathlef (Fri May 04 2007 - 14:15:03 CDT)
- AMBER: Simulated Annealing - Best way to create randomness Seth Lilavivat (Fri May 04 2007 - 15:42:18 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? David Mobley (Fri May 04 2007 - 16:09:36 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? Catein Catherine (Fri May 04 2007 - 20:55:26 CDT)
- Re: AMBER: Rate of Dissociation Catein Catherine (Fri May 04 2007 - 21:10:02 CDT)
- AMBER: RE: RE: AMBER: Problem with SCC-DFTB parameter files ÇÑÀç¹ü (Fri May 04 2007 - 23:25:29 CDT)
- AMBER: polarizable water models. Karen Callahan (Sat May 05 2007 - 01:38:34 CDT)
- Re: AMBER: polarizable water models. David A. Case (Sun May 06 2007 - 16:31:50 CDT)
- AMBER: FW: Query regarding using tleap for preparing carbohydrate molecule Ross Walker (Sun May 06 2007 - 20:31:24 CDT)
- Re: AMBER: Rate of Dissociation wang (Sun May 06 2007 - 20:44:36 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? wang (Mon May 07 2007 - 01:20:41 CDT)
- AMBER: REF file problem deepti nayar (Mon May 07 2007 - 01:49:53 CDT)
- Re: AMBER: REF file problem Gustavo Seabra (Mon May 07 2007 - 07:20:10 CDT)
- Re: AMBER: Potential of mean force, how to calculate rate of dissociation? Gustavo Seabra (Mon May 07 2007 - 07:26:55 CDT)
- Re: AMBER: FW: Query regarding using tleap for preparing carbohydrate molecule Gustavo Seabra (Mon May 07 2007 - 07:36:15 CDT)
- AMBER: Atoms closer to 2 angstroms to each other Christopher Gaughan (Mon May 07 2007 - 09:38:06 CDT)
- Re: AMBER: Atoms closer to 2 angstroms to each other David A. Case (Mon May 07 2007 - 09:55:30 CDT)
- RE: AMBER: FW: Query regarding using tleap for preparing carbohydrate molecule Ross Walker (Mon May 07 2007 - 10:11:12 CDT)
- RE: AMBER: REF file problem Ross Walker (Mon May 07 2007 - 10:13:58 CDT)
- RE: AMBER: Atoms closer to 2 angstroms to each other Ross Walker (Mon May 07 2007 - 10:30:29 CDT)
- AMBER: GB Energy Spreads for MD Structures adelene_at_Stanford.EDU (Mon May 07 2007 - 14:19:47 CDT)
- Re: AMBER: GB Energy Spreads for MD Structures David A. Case (Mon May 07 2007 - 16:13:41 CDT)
- AMBER: Keq computations Sean Rathlef (Mon May 07 2007 - 18:10:09 CDT)
- AMBER: NAB MD Output adelene_at_Stanford.EDU (Mon May 07 2007 - 17:30:51 CDT)
- AMBER: PME memory requirement Russell Brown (Mon May 07 2007 - 17:36:45 CDT)
- Re: AMBER: Keq computations Carlos Simmerling (Mon May 07 2007 - 17:43:53 CDT)
- Re: AMBER: NAB MD Output Russell Brown (Mon May 07 2007 - 18:06:27 CDT)
- Re: AMBER: PME memory requirement Robert Duke (Mon May 07 2007 - 21:05:48 CDT)
- AMBER: PMF define dehedral angel and distance restrainst for center of mass of domains. Catein Catherine (Tue May 08 2007 - 01:28:14 CDT)
- Re: AMBER: NAB MD Output Andreas Svrcek-Seiler (Tue May 08 2007 - 05:09:18 CDT)
- Re: AMBER: PMF define dehedral angel and distance restrainst for center of mass of domains. Carlos Simmerling (Tue May 08 2007 - 06:11:42 CDT)
- AMBER: query regarding parameter files for manganese and mercuric ions neetu_at_imtech.res.in (Tue May 08 2007 - 06:40:56 CDT)
- AMBER: Complexes Beale, John (Tue May 08 2007 - 13:54:34 CDT)
- Re: AMBER: Complexes M. L. Dodson (Tue May 08 2007 - 14:14:59 CDT)
- Re: AMBER: Complexes M. L. Dodson (Tue May 08 2007 - 14:26:11 CDT)
- AMBER: simulations stops in half way Vijay Manickam Achari (Wed May 09 2007 - 00:01:21 CDT)
- AMBER: hybrid remd Geoff Wood (Wed May 09 2007 - 05:15:16 CDT)
- AMBER: Compiling parallel Amber9 on Linux cluster Jesus Angulo (Wed May 09 2007 - 05:27:23 CDT)
- AMBER: hybrid remd Geoff Wood (Wed May 09 2007 - 06:22:09 CDT)
- AMBER: pmemd source issues Thomas Zeiser (Wed May 09 2007 - 06:33:11 CDT)
- AMBER: leap problem Achuth Prabhu (Wed May 09 2007 - 07:03:51 CDT)
- AMBER: leap problem Achuth Prabhu (Wed May 09 2007 - 07:28:01 CDT)
- AMBER: leap problem Achuth Prabhu (Wed May 09 2007 - 07:48:33 CDT)
- Re: AMBER: simulations stops in half way Robert Duke (Wed May 09 2007 - 07:51:17 CDT)
- Re: AMBER: pmemd source issues Robert Duke (Wed May 09 2007 - 08:37:59 CDT)
- AMBER: Covert NOEs form Xplor to Amber saccenti_at_cerm.unifi.it (Wed May 09 2007 - 09:09:12 CDT)
- Re: AMBER: pmemd source issues Thomas Zeiser (Wed May 09 2007 - 10:00:00 CDT)
- RE: AMBER: Compiling parallel Amber9 on Linux cluster Ross Walker (Wed May 09 2007 - 10:27:36 CDT)
- Re: AMBER: pmemd source issues Robert Duke (Wed May 09 2007 - 10:43:36 CDT)
- Re: AMBER: hybrid remd Asim Okur (Wed May 09 2007 - 14:07:59 CDT)
- Re: AMBER: hybrid remd Geoff Wood (Wed May 09 2007 - 15:38:45 CDT)
- Re: AMBER: hybrid remd Carlos Simmerling (Wed May 09 2007 - 15:52:03 CDT)
- Re: AMBER: hybrid remd Geoff Wood (Wed May 09 2007 - 16:13:32 CDT)
- Re: AMBER: hybrid remd Carlos Simmerling (Wed May 09 2007 - 16:18:05 CDT)
- AMBER: Amber 9 compile on OS X Knut Langsetmo (Wed May 09 2007 - 16:29:44 CDT)
- AMBER: (no subject) Dingguo Xu (Wed May 09 2007 - 16:29:58 CDT)
- Re: AMBER: hybrid remd Geoff Wood (Wed May 09 2007 - 16:30:50 CDT)
- Fwd: AMBER: MM-PBSA: Can't finish the binding energy process jitrayut jitonnom (Wed May 09 2007 - 23:12:55 CDT)
- AMBER: Missing BELE for MM in 1 (residue 47) AYTUG TUNCEL (Thu May 10 2007 - 02:32:26 CDT)
- AMBER: umbrella sampling: distance restraint Catein Catherine (Thu May 10 2007 - 05:25:46 CDT)
- AMBER: restraint_wt and fixing chi deepti nayar (Thu May 10 2007 - 05:44:40 CDT)
- AMBER: use of pucker function in ptraj Ben Tan (Thu May 10 2007 - 06:00:41 CDT)
- Re: AMBER: hybrid remd Carlos Simmerling (Thu May 10 2007 - 06:20:14 CDT)
- Re: AMBER: hybrid remd Geoff Wood (Thu May 10 2007 - 06:49:59 CDT)
- Re: AMBER: pmemd source issues Thomas Zeiser (Thu May 10 2007 - 06:55:16 CDT)
- Re: AMBER: umbrella sampling: distance restraint Jerome.GOLEBIOWSKI_at_unice.fr (Thu May 10 2007 - 07:19:35 CDT)
- AMBER: query regarding parameter files for manganese neetu_at_imtech.res.in (Thu May 10 2007 - 07:43:44 CDT)
- Re: AMBER: hybrid remd Carlos Simmerling (Thu May 10 2007 - 08:39:43 CDT)
- Re: AMBER: use of pucker function in ptraj Thomas Cheatham III (Thu May 10 2007 - 11:48:58 CDT)
- Re: AMBER: restraint_wt and fixing chi Thomas Cheatham III (Thu May 10 2007 - 12:09:59 CDT)
- AMBER: Electrostatic Energy in MD Simulation (GB) adelene_at_Stanford.EDU (Thu May 10 2007 - 12:20:32 CDT)
- Re: AMBER: Electrostatic Energy in MD Simulation (GB) David A. Case (Thu May 10 2007 - 12:45:45 CDT)
- AMBER: need help to calculate IR spectra from amber trajectory S.Sundar Raman (Thu May 10 2007 - 12:53:16 CDT)
- AMBER: bug in reprocessing with PB? David Mobley (Thu May 10 2007 - 13:08:10 CDT)
- Re: AMBER: bug in reprocessing with PB? Carlos Simmerling (Thu May 10 2007 - 13:14:08 CDT)
- Re: AMBER: bug in reprocessing with PB? David A. Case (Thu May 10 2007 - 13:24:20 CDT)
- RE: AMBER: bug in reprocessing with PB? Ray Luo (Thu May 10 2007 - 13:52:37 CDT)
- AMBER: Sander (Amber 9) crash on cortex Evan Kelly (Thu May 10 2007 - 13:57:20 CDT)
- Re: AMBER: need help to calculate IR spectra from amber trajectory Adrian Roitberg (Thu May 10 2007 - 14:16:59 CDT)
- Re: AMBER: bug in reprocessing with PB? David Mobley (Thu May 10 2007 - 14:20:26 CDT)
- Re: AMBER: bug in reprocessing with PB? David Mobley (Thu May 10 2007 - 14:18:23 CDT)
- Re: AMBER: hybrid remd Geoff Wood (Thu May 10 2007 - 14:24:55 CDT)
- Re: AMBER: Sander (Amber 9) crash on cortex David A. Case (Thu May 10 2007 - 14:55:16 CDT)
- AMBER: single phospholipid molecule in vacuo Kliman, Michal (Thu May 10 2007 - 15:02:55 CDT)
- RE: AMBER: Sander (Amber 9) crash on cortex Ross Walker (Thu May 10 2007 - 15:09:19 CDT)
- Re: AMBER: (no subject) David A. Case (Thu May 10 2007 - 15:37:21 CDT)
- Re: AMBER: leap problem David A. Case (Thu May 10 2007 - 15:51:13 CDT)
- RE: AMBER: bug in reprocessing with PB? Ray Luo (Thu May 10 2007 - 16:04:42 CDT)
- Re: AMBER: Amber 9 compile on OS X David A. Case (Thu May 10 2007 - 18:48:49 CDT)
- Re: AMBER: single phospholipid molecule in vacuo David A. Case (Thu May 10 2007 - 18:51:39 CDT)
- AMBER: Rotations about center of mass of an isolated system Jennie Thomas (Thu May 10 2007 - 20:08:06 CDT)
- Re: AMBER: Sander (Amber 9) crash on cortex Evan Kelly (Thu May 10 2007 - 20:10:46 CDT)
- Re: AMBER: Sander (Amber 9) crash on cortex Thomas Cheatham (Thu May 10 2007 - 21:56:19 CDT)
- Re: AMBER: Sander (Amber 9) crash on cortex Robert Duke (Thu May 10 2007 - 23:46:28 CDT)
- AMBER: how to solvate the protein with different solvents Rachel (Fri May 11 2007 - 08:01:07 CDT)
- AMBER: antechamber Santanu Roy (Fri May 11 2007 - 08:40:24 CDT)
- AMBER: correlation between PBTOT and GBTOT values in a MD trajectory Giulio Rastelli (Fri May 11 2007 - 09:47:39 CDT)
- RE: AMBER: correlation between PBTOT and GBTOT values in a MD trajectory Ray Luo (Fri May 11 2007 - 11:54:21 CDT)
- AMBER: binding energy_decomposition per residue Srinivas Odde (Fri May 11 2007 - 16:39:50 CDT)
- Re: AMBER: antechamber Scott Brozell (Fri May 11 2007 - 17:46:24 CDT)
- AMBER: missing impropers for nitros? David Mobley (Fri May 11 2007 - 19:03:55 CDT)
- AMBER: Re: missing impropers for nitros? David Mobley (Fri May 11 2007 - 19:15:11 CDT)
- AMBER: distance.restraint for two groups of atoms (center of mass) Catein Catherine (Fri May 11 2007 - 21:30:36 CDT)
- AMBER: PMF for DG calculation. Catein Catherine (Fri May 11 2007 - 21:45:30 CDT)
- AMBER: PMF along 1D axis or every axis Catein Catherine (Fri May 11 2007 - 22:05:57 CDT)
- AMBER: PMF: WHAM result Catein Catherine (Fri May 11 2007 - 22:28:30 CDT)
- AMBER: antechamber Santanu Roy (Sat May 12 2007 - 00:50:13 CDT)
- Re: AMBER: antechamber David A. Case (Sat May 12 2007 - 12:13:39 CDT)
- Re: AMBER: distance.restraint for two groups of atoms (center of mass) David A. Case (Sat May 12 2007 - 12:18:59 CDT)
- Re: AMBER: missing impropers for nitros? David A. Case (Sat May 12 2007 - 12:37:27 CDT)
- AMBER: PMEMD and restart files Austin B. Yongye (Sat May 12 2007 - 13:21:30 CDT)
- AMBER: Small scale compute environments M. L. Dodson (Sat May 12 2007 - 14:13:59 CDT)
- Re: AMBER: PMEMD and restart files Robert Duke (Sat May 12 2007 - 17:01:38 CDT)
- AMBER: problem about the coordinates out the box Shaoqing.Zhang_at_mail.uh.edu (Sat May 12 2007 - 22:26:45 CDT)
- AMBER: restraining atoms deepti nayar (Sun May 13 2007 - 23:39:15 CDT)
- AMBER: polymer Achuth Prabhu (Mon May 14 2007 - 07:55:12 CDT)
- Re: AMBER: missing impropers for nitros? David Mobley (Mon May 14 2007 - 08:28:34 CDT)
- Re: AMBER: PMF for DG calculation. David Mobley (Mon May 14 2007 - 09:06:46 CDT)
- Re: AMBER: PMF for DG calculation. David A. Case (Mon May 14 2007 - 10:01:41 CDT)
- Re: AMBER: Rotations about center of mass of an isolated system David A. Case (Mon May 14 2007 - 11:19:20 CDT)
- Re: AMBER: restraining atoms Thomas Cheatham III (Mon May 14 2007 - 12:27:01 CDT)
- Re: AMBER: Small scale compute environments Robert Duke (Mon May 14 2007 - 10:59:50 CDT)
- Re: AMBER: Small scale compute environments M. L. Dodson (Mon May 14 2007 - 13:32:36 CDT)
- Re: AMBER: Rotations about center of mass of an isolated system Jennie Thomas (Mon May 14 2007 - 14:50:30 CDT)
- AMBER: Energy Spread using GB & Langevin Dynamics (NAB) adelene_at_Stanford.EDU (Mon May 14 2007 - 15:17:28 CDT)
- Re: AMBER: Rotations about center of mass of an isolated system David A. Case (Mon May 14 2007 - 16:37:09 CDT)
- Re: AMBER: Energy Spread using GB & Langevin Dynamics (NAB) David A. Case (Mon May 14 2007 - 16:40:50 CDT)
- Re: AMBER: Rotations about center of mass of an isolated system Jennie Thomas (Mon May 14 2007 - 18:55:44 CDT)
- Re: AMBER: Rotations about center of mass of an isolated system David A. Case (Mon May 14 2007 - 19:06:24 CDT)
- AMBER: assigning of head atom as null. SHARAD gupta (Tue May 15 2007 - 02:26:23 CDT)
- Re: AMBER: Energy Spread using GB & Langevin Dynamics (NAB) Andreas Svrcek-Seiler (Tue May 15 2007 - 04:20:16 CDT)
- AMBER: Finding x-displacement Ben Tan (Tue May 15 2007 - 04:23:11 CDT)
- AMBER: Heat of Vaporization Rita Cassia (Tue May 15 2007 - 07:35:49 CDT)
- Re: AMBER: Energy Spread using GB & Langevin Dynamics (NAB) David A. Case (Tue May 15 2007 - 11:03:52 CDT)
- Re: AMBER: Heat of Vaporization David A. Case (Tue May 15 2007 - 11:09:27 CDT)
- Re: AMBER: Heat of Vaporization Thomas Cheatham III (Tue May 15 2007 - 11:37:01 CDT)
- Re: AMBER: Heat of Vaporization David A. Case (Tue May 15 2007 - 11:51:36 CDT)
- AMBER: constant pH with 25 titrable sites tri nam Vo (Tue May 15 2007 - 12:44:22 CDT)
- AMBER: Is there any way to extract one frame from a whole trajectory just saving one file by using ptraj j j (Tue May 15 2007 - 12:55:40 CDT)
- Re: AMBER: Is there any way to extract one frame from a whole trajectory just saving one file by using ptraj Carlos Simmerling (Tue May 15 2007 - 13:11:57 CDT)
- Re: AMBER: Is there any way to extract one frame from a whole trajectory just saving one file by using ptraj j j (Tue May 15 2007 - 13:32:30 CDT)
- Re: AMBER: Is there any way to extract one frame from a whole trajectory just saving one file by using ptraj Gustavo Seabra (Tue May 15 2007 - 14:11:21 CDT)
- Re: AMBER: Is there any way to extract one frame from a whole trajectory just saving one file by using ptraj Carlos Simmerling (Tue May 15 2007 - 14:55:54 CDT)
- RE: AMBER: Heat of Vaporization Falck da Silva Eirik (Tue May 15 2007 - 15:00:31 CDT)
- Re: AMBER: Heat of Vaporization David A. Case (Tue May 15 2007 - 15:14:24 CDT)
- AMBER: total energies during MM-PBSA Hu, Shaowen (JSC-SK)[USRA] (Tue May 15 2007 - 16:01:11 CDT)
- AMBER: AMBER8 compiler with intel 9.1 compiler Peter Z. Qin (Tue May 15 2007 - 20:37:22 CDT)
- Re: AMBER: Is there any way to extract one frame from a whole trajectory just saving one file by using ptraj j j (Wed May 16 2007 - 03:56:54 CDT)
- Re: AMBER: Is there any way to extract one frame from a whole trajectory just saving one file by using ptraj j j (Wed May 16 2007 - 04:01:24 CDT)
- Re: AMBER: Is there any way to extract one frame from a whole trajectory just saving one file by using ptraj Carlos Simmerling (Wed May 16 2007 - 06:09:01 CDT)
- Re: AMBER: Is there any way to extract one frame from a whole trajectory just saving one file by using ptraj Carlos Simmerling (Wed May 16 2007 - 06:11:15 CDT)
- Re: AMBER: Is there any way to extract one frame from a whole trajectory just saving one file by using ptraj j j (Wed May 16 2007 - 06:39:48 CDT)
- Re: AMBER: Heat of Vaporization Rita Cassia (Wed May 16 2007 - 06:55:49 CDT)
- AMBER: Thermodynamic Integration (TI) error: "numgroup must be 2 if icfe is set" S. Jamal Rahi (Wed May 16 2007 - 08:22:47 CDT)
- Re: AMBER: Thermodynamic Integration (TI) error: "numgroup must be 2 if icfe is set" Carlos Simmerling (Wed May 16 2007 - 08:29:35 CDT)
- AMBER: MM-PBSA calculation with GB dynamic Andrea - Tisacali (Wed May 16 2007 - 08:56:15 CDT)
- AMBER: total energies during MM-PBSA Hu, Shaowen (JSC-SK)[USRA] (Wed May 16 2007 - 08:57:26 CDT)
- Re: AMBER: MM-PBSA calculation with GB dynamic Carlos Simmerling (Wed May 16 2007 - 09:03:01 CDT)
- Re: AMBER: Thermodynamic Integration (TI) error: "numgroup must be 2 if icfe is set" Thomas Steinbrecher (Wed May 16 2007 - 10:48:20 CDT)
- AMBER: protonate Christopher Gaughan (Wed May 16 2007 - 10:56:37 CDT)
- Re: AMBER: Thermodynamic Integration (TI) error: "numgroup must be 2 if icfe is set" David A. Case (Wed May 16 2007 - 11:04:57 CDT)
- Re: AMBER: protonate saccenti_at_cerm.unifi.it (Wed May 16 2007 - 11:22:20 CDT)
- AMBER: Ignore my reply to Amber protonate! saccenti_at_cerm.unifi.it (Wed May 16 2007 - 11:24:12 CDT)
- AMBER: Minimization with heme group saccenti_at_cerm.unifi.it (Wed May 16 2007 - 11:25:23 CDT)
- Re: AMBER: protonate David A. Case (Wed May 16 2007 - 11:32:37 CDT)
- Re: AMBER: protonate David A. Case (Wed May 16 2007 - 11:33:20 CDT)
- AMBER: Re: Minimization with heme group saccenti_at_cerm.unifi.it (Wed May 16 2007 - 12:11:43 CDT)
- AMBER: work with constant pH on amber8 tri nam Vo (Wed May 16 2007 - 12:52:47 CDT)
- AMBER: work with constant pH on amber8 tri nam Vo (Wed May 16 2007 - 13:13:43 CDT)
- Re: AMBER: work with constant pH on amber8 David A. Case (Wed May 16 2007 - 13:40:42 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler Scott Brozell (Wed May 16 2007 - 13:42:06 CDT)
- AMBER: NOC 3.0 is released mchen2_at_mailer.fsu.edu (Wed May 16 2007 - 15:03:30 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler Peter Z. Qin (Wed May 16 2007 - 15:37:53 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler David A. Case (Wed May 16 2007 - 16:01:21 CDT)
- AMBER: hbond ptraj Catein Catherine (Wed May 16 2007 - 22:39:02 CDT)
- Re: AMBER: hbond ptraj Thomas Cheatham (Wed May 16 2007 - 22:57:46 CDT)
- Re: AMBER: hbond ptraj Catein Catherine (Thu May 17 2007 - 01:33:31 CDT)
- AMBER: Is the simulation reasonable ? (SMD : dissocation antibody-antigen) wang (Thu May 17 2007 - 01:41:39 CDT)
- AMBER: high energy with mm_gbsa igb=5 AYTUG TUNCEL (Thu May 17 2007 - 04:53:07 CDT)
- Re: AMBER: hbond ptraj Chris Moth (Thu May 17 2007 - 07:14:31 CDT)
- AMBER: deeper problem with the energetics Pankaj R. Daga (Thu May 17 2007 - 08:46:33 CDT)
- Re: AMBER: deeper problem with the energetics Carlos Simmerling (Thu May 17 2007 - 08:56:43 CDT)
- Re: AMBER: hbond ptraj Thomas Cheatham (Thu May 17 2007 - 09:32:15 CDT)
- AMBER: Average structure Steve Seibold (Thu May 17 2007 - 09:33:41 CDT)
- Re: AMBER: Average structure Thomas Cheatham (Thu May 17 2007 - 09:57:12 CDT)
- Re: AMBER: Is the simulation reasonable ? (SMD : dissocation antibody-antigen) Adrian Roitberg (Thu May 17 2007 - 10:06:49 CDT)
- AMBER: multiple excecution of sander Achuth Prabhu (Thu May 17 2007 - 10:55:47 CDT)
- Re: AMBER: multiple excecution of sander Carlos Simmerling (Thu May 17 2007 - 11:03:23 CDT)
- AMBER: NAB Average Structure adelene_at_Stanford.EDU (Thu May 17 2007 - 11:12:47 CDT)
- Re: AMBER: NAB Average Structure David A. Case (Thu May 17 2007 - 11:32:59 CDT)
- Re: AMBER: deeper problem with the energetics Pankaj R. Daga (Thu May 17 2007 - 11:50:11 CDT)
- Re: AMBER: NAB Average Structure adelene_at_Stanford.EDU (Thu May 17 2007 - 13:59:42 CDT)
- Re: AMBER: NAB Average Structure Andreas Svrcek-Seiler (Thu May 17 2007 - 14:40:26 CDT)
- Re: AMBER: NAB Average Structure David A. Case (Thu May 17 2007 - 16:13:10 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler Peter Z. Qin (Thu May 17 2007 - 17:49:39 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler Peter Z. Qin (Thu May 17 2007 - 18:17:29 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler David A. Case (Thu May 17 2007 - 20:32:55 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler David A. Case (Thu May 17 2007 - 20:38:00 CDT)
- Re :Re: AMBER: multiple excecution of sander Achuth Prabhu (Fri May 18 2007 - 01:03:23 CDT)
- AMBER: high energy with mm_gbsa igb=5 AYTUG TUNCEL (Fri May 18 2007 - 01:39:43 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler Mark Williamson (Fri May 18 2007 - 07:19:37 CDT)
- AMBER: Some questions on mm_pbsa Hu, Shaowen (JSC-SK)[USRA] (Fri May 18 2007 - 09:53:35 CDT)
- AMBER: Temperature Drift in MD (NAB) adelene_at_Stanford.EDU (Fri May 18 2007 - 17:49:25 CDT)
- Re: AMBER: Temperature Drift in MD (NAB) David A. Case (Fri May 18 2007 - 18:07:09 CDT)
- Re: AMBER: Temperature Drift in MD (NAB) adelene_at_Stanford.EDU (Fri May 18 2007 - 18:56:39 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler Peter Z. Qin (Fri May 18 2007 - 19:53:29 CDT)
- AMBER: Statictical significance of differences in energy mean values between different simulations Mostafa Sadighi (Sat May 19 2007 - 10:54:40 CDT)
- Re: AMBER: Temperature Drift in MD (NAB) David A. Case (Sat May 19 2007 - 23:03:24 CDT)
- AMBER: antechamber question Francesco Pietra (Sun May 20 2007 - 02:05:59 CDT)
- Re: AMBER: antechamber question David A. Case (Sun May 20 2007 - 09:44:18 CDT)
- Re: AMBER: antechamber question Francesco Pietra (Sun May 20 2007 - 10:36:28 CDT)
- AMBER: Langevin dynamics in NAB David A. Case (Sun May 20 2007 - 20:39:42 CDT)
- AMBER: [AMBER] QM/MM-DFTB ¹Ú¹ÎÈñ (Sun May 20 2007 - 20:55:42 CDT)
- AMBER: QM/MM-DRFTB ¹Ú¹ÎÈñ (Sun May 20 2007 - 20:57:56 CDT)
- AMBER: Docking with AMber Urszula Uciechowska (Mon May 21 2007 - 02:13:01 CDT)
- AMBER: ambpdb gives empty cpin Achuth Prabhu (Mon May 21 2007 - 03:27:16 CDT)
- AMBER: Pi-pi interactions Roberto Veiga (Mon May 21 2007 - 07:33:32 CDT)
- Re: AMBER: Pi-pi interactions Jiri Sponer (Mon May 21 2007 - 08:09:08 CDT)
- Re: AMBER: Pi-pi interactions David Cerutti (Mon May 21 2007 - 08:13:16 CDT)
- Re: AMBER: Pi-pi interactions Jiri Sponer (Mon May 21 2007 - 08:28:22 CDT)
- Re: AMBER: Pi-pi interactions Adrian Roitberg (Mon May 21 2007 - 08:56:51 CDT)
- Re: AMBER: deeper problem with the energetics Carlos Simmerling (Mon May 21 2007 - 09:11:58 CDT)
- Re: Re :Re: AMBER: multiple excecution of sander Carlos Simmerling (Mon May 21 2007 - 09:12:59 CDT)
- Re: AMBER: Pi-pi interactions Roberto Veiga (Mon May 21 2007 - 10:03:16 CDT)
- AMBER: REMD error Jason K (Mon May 21 2007 - 10:20:12 CDT)
- Re: AMBER: Pi-pi interactions Jiri Sponer (Mon May 21 2007 - 10:34:37 CDT)
- Re: AMBER: REMD error Carlos Simmerling (Mon May 21 2007 - 10:41:53 CDT)
- Re: AMBER: QM/MM-DRFTB Gustavo Seabra (Mon May 21 2007 - 10:43:43 CDT)
- Fwd: AMBER: missing impropers for nitros? David Mobley (Mon May 21 2007 - 10:47:04 CDT)
- RE: AMBER: missing impropers for nitros? Junmei Wang (Mon May 21 2007 - 12:48:58 CDT)
- Re: AMBER: QM/MM-DRFTB Gustavo Seabra (Mon May 21 2007 - 14:18:10 CDT)
- AMBER: dielectric constant in GB/SA Shuting Wei (Mon May 21 2007 - 15:25:12 CDT)
- Re: AMBER: Docking with AMber David A. Case (Mon May 21 2007 - 23:26:07 CDT)
- Re: AMBER: Pi-pi interactions Roberto Veiga (Tue May 22 2007 - 04:27:22 CDT)
- Re: AMBER: Pi-pi interactions Jiri Sponer (Tue May 22 2007 - 05:14:36 CDT)
- Re: AMBER: ambpdb gives empty cpin tri nam Vo (Tue May 22 2007 - 09:01:42 CDT)
- AMBER: antechamber question Yao Xin (Tue May 22 2007 - 08:39:41 CDT)
- AMBER: Ionic strength in pbsa Hu, Shaowen (JSC-SK)[USRA] (Tue May 22 2007 - 09:59:01 CDT)
- RE: AMBER: antechamber question Junmei Wang (Tue May 22 2007 - 10:08:18 CDT)
- Re: AMBER: REMD error Jason K (Tue May 22 2007 - 14:02:22 CDT)
- AMBER: Simulated Annealing - Start with Poor Structure Seth Lilavivat (Tue May 22 2007 - 14:28:54 CDT)
- Re: AMBER: Ionic strength in pbsa Qizhi Cui (Tue May 22 2007 - 15:21:27 CDT)
- RE: AMBER: Ionic strength in pbsa Hu, Shaowen (JSC-SK)[USRA] (Tue May 22 2007 - 15:29:02 CDT)
- Re: AMBER: Simulated Annealing - Start with Poor Structure Carlos Simmerling (Tue May 22 2007 - 16:08:28 CDT)
- Re: AMBER: REMD error Carlos Simmerling (Tue May 22 2007 - 16:15:43 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler Scott Brozell (Tue May 22 2007 - 21:20:26 CDT)
- AMBER: hbond ptraj pls help. Catein Catherine (Tue May 22 2007 - 23:56:50 CDT)
- AMBER: (no subject) Catein Catherine (Wed May 23 2007 - 00:00:36 CDT)
- AMBER: MM/GBSA error message Catein Catherine (Wed May 23 2007 - 00:09:51 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler Peter Z. Qin (Wed May 23 2007 - 00:39:18 CDT)
- Re: AMBER: hbond ptraj pls help. Kateryna Miroshnychenko (Wed May 23 2007 - 04:01:03 CDT)
- Re: AMBER: hbond ptraj pls help. Catein Catherine (Wed May 23 2007 - 05:17:27 CDT)
- Re: AMBER: hbond ptraj pls help. Kateryna Miroshnychenko (Wed May 23 2007 - 06:22:18 CDT)
- AMBER: Minimization increases energy Hayden Eastwood (Wed May 23 2007 - 11:21:35 CDT)
- AMBER: Minimization increases energy Hayden Eastwood (Wed May 23 2007 - 11:24:15 CDT)
- Re: AMBER: Minimization increases energy saccenti_at_cerm.unifi.it (Wed May 23 2007 - 12:22:33 CDT)
- AMBER: inconsistency between PBSA and GBSA AYTUG TUNCEL (Wed May 23 2007 - 08:26:32 CDT)
- AMBER: inconsistency between PBSA and GBSA AYTUG TUNCEL (Wed May 23 2007 - 12:30:11 CDT)
- Re: AMBER: adding polar hydrogens j j (Thu May 24 2007 - 06:09:04 CDT)
- Re: AMBER: adding polar hydrogens j j (Thu May 24 2007 - 08:00:12 CDT)
- Re: AMBER: REMD error Jason K (Thu May 24 2007 - 10:31:17 CDT)
- Re: AMBER: REMD error Carlos Simmerling (Thu May 24 2007 - 10:41:04 CDT)
- AMBER: thermodynamic integration Servaas Michielssens (Thu May 24 2007 - 10:50:48 CDT)
- AMBER: NAB normal mode output nadiav_at_soton.ac.uk (Thu May 24 2007 - 12:27:59 CDT)
- Re: AMBER: REMD error Carlos Simmerling (Thu May 24 2007 - 12:23:02 CDT)
- AMBER: rfree: Error input file Steve Seibold (Thu May 24 2007 - 13:43:02 CDT)
- Re: AMBER: rfree: Error input file Carlos Simmerling (Thu May 24 2007 - 13:56:51 CDT)
- AMBER: Steve Seibold (Thu May 24 2007 - 14:00:09 CDT)
- RE: AMBER: rfree: Error input file Steve Seibold (Thu May 24 2007 - 14:22:39 CDT)
- AMBER: parameter file for Fe-S cluster devrani mitra (Thu May 24 2007 - 17:26:05 CDT)
- Re: AMBER: NAB normal mode output David A. Case (Thu May 24 2007 - 23:17:04 CDT)
- Re: AMBER: thermodynamic integration David A. Case (Thu May 24 2007 - 23:14:43 CDT)
- Re: AMBER: thermodynamic integration Servaas Michielssens (Fri May 25 2007 - 02:23:21 CDT)
- Re: AMBER: NAB normal mode output Andreas Svrcek-Seiler (Fri May 25 2007 - 04:15:46 CDT)
- AMBER: grid output: bulk water density mathew k varghese (Fri May 25 2007 - 05:19:30 CDT)
- AMBER: pi-pi interactions Sara Alexandra Moura (Fri May 25 2007 - 05:36:05 CDT)
- AMBER: Less error Urszula Uciechowska (Fri May 25 2007 - 05:32:56 CDT)
- Re: AMBER: Less error Carlos Simmerling (Fri May 25 2007 - 05:42:48 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler Peter Z. Qin (Fri May 25 2007 - 11:49:13 CDT)
- Re: AMBER: AMBER8 compiler with intel 9.1 compiler Scott Brozell (Fri May 25 2007 - 12:45:55 CDT)
- AMBER: software to extract data from the output file?? Avinash Kumar (Sat May 26 2007 - 03:49:37 CDT)
- Re: AMBER: software to extract data from the output file?? Steven Winfield (Sat May 26 2007 - 04:15:52 CDT)
- AMBER: inconsistency between PBSA and GBSA - help AYTUG TUNCEL (Sat May 26 2007 - 04:35:36 CDT)
- Re: AMBER: software to extract data from the output file?? Gustavo Seabra (Sat May 26 2007 - 09:09:08 CDT)
- AMBER: Question about determination of hydration points in binding sites Cenk Andac (Sun May 27 2007 - 03:51:27 CDT)
- AMBER: Calculating RMS for each residue? tri nam Vo (Sun May 27 2007 - 11:01:38 CDT)
- AMBER: Antechamber Catein Catherine (Sun May 27 2007 - 19:45:42 CDT)
- AMBER: water count mathew k varghese (Mon May 28 2007 - 01:41:50 CDT)
- Re: AMBER: Antechamber Cenk Andac (Mon May 28 2007 - 01:56:57 CDT)
- AMBER: Amber 9 install on Debian Linux amd64 Francesco Pietra (Mon May 28 2007 - 02:14:49 CDT)
- Re: AMBER: Antechamber Francesco Pietra (Mon May 28 2007 - 02:20:55 CDT)
- Re: AMBER: water count Carlos Simmerling (Mon May 28 2007 - 07:20:30 CDT)
- AMBER: divcon missing in Antechamber 1.27 Neelanjana Sengupta (Mon May 28 2007 - 19:54:18 CDT)
- AMBER: Re: divcon missing in Antechamber 1.27 Neelanjana Sengupta (Mon May 28 2007 - 19:56:55 CDT)
- Re: AMBER: divcon missing in Antechamber 1.27 David A. Case (Mon May 28 2007 - 20:33:52 CDT)
- Re: AMBER: divcon missing in Antechamber 1.27 Neelanjana Sengupta (Mon May 28 2007 - 21:18:08 CDT)
- AMBER: 64-bit pgf90 revisited Ingvar Lagerstedt (Tue May 29 2007 - 03:39:07 CDT)
- AMBER: Les analyse Urszula Uciechowska (Tue May 29 2007 - 04:12:07 CDT)
- Re: AMBER: Les analyse Carlos Simmerling (Tue May 29 2007 - 06:16:22 CDT)
- Re: AMBER: Les analyse Wei Zhang (Tue May 29 2007 - 09:26:28 CDT)
- Re: AMBER: divcon missing in Antechamber 1.27 David A. Case (Tue May 29 2007 - 09:24:20 CDT)
- AMBER: error in running sander devrani mitra (Tue May 29 2007 - 15:22:35 CDT)
- Re: AMBER: error in running sander Carlos Simmerling (Tue May 29 2007 - 15:47:24 CDT)
- Re: AMBER: error in running sander devrani mitra (Tue May 29 2007 - 16:27:09 CDT)
- Re: AMBER: error in running sander Carlos Simmerling (Tue May 29 2007 - 16:33:42 CDT)
- Re: AMBER: Hydration points Carlos Simmerling (Tue May 29 2007 - 16:34:54 CDT)
- AMBER: Hydration points Cenk Andac (Tue May 29 2007 - 16:31:24 CDT)
- Re: AMBER: error in running sander devrani mitra (Tue May 29 2007 - 17:01:40 CDT)
- Re: AMBER: error in running sander Carlos Simmerling (Tue May 29 2007 - 17:06:29 CDT)
- RE: AMBER: error in running sander Ross Walker (Tue May 29 2007 - 17:08:30 CDT)
- Re: AMBER: error in running sander devrani mitra (Tue May 29 2007 - 19:41:57 CDT)
- Re: AMBER: error in running sander devrani mitra (Tue May 29 2007 - 20:12:59 CDT)
- Re: AMBER: error in running sander Thomas Cheatham (Tue May 29 2007 - 22:03:36 CDT)
- AMBER: Umbrella Sampling for the twist angle of a DNA base pairs Catein Catherine (Wed May 30 2007 - 03:33:18 CDT)
- AMBER: electric field calculation lishan yao (Wed May 30 2007 - 07:25:16 CDT)
- AMBER: Atomic positional Fluctuations Sandeep Kaushik (Wed May 30 2007 - 08:08:09 CDT)
- AMBER: Umbrella Sampling for the twist angle of a DNA base pairs Catein Catherine (Wed May 30 2007 - 10:11:36 CDT)
- AMBER: (no subject) Catein Catherine (Wed May 30 2007 - 10:16:19 CDT)
- AMBER: Backbone stability problems with parm94, glycam04 and AMBER 8 Andrew Borgert (Wed May 30 2007 - 12:35:51 CDT)
- Re: AMBER: Backbone stability problems with parm94, glycam04 and AMBER 8 Carlos Simmerling (Wed May 30 2007 - 12:50:05 CDT)
- Re: AMBER: (no subject) M. L. Dodson (Wed May 30 2007 - 12:54:04 CDT)
- RE: AMBER: error in running sander Ross Walker (Tue May 29 2007 - 21:49:37 CDT)
- Re: AMBER: Backbone stability problems with parm94, glycam04 and AMBER 8 kkirschn_at_hamilton.edu (Wed May 30 2007 - 15:28:55 CDT)
- AMBER: cutoff & speed-up of GBSA Wei Chen (Wed May 30 2007 - 15:27:53 CDT)
- Re: AMBER: Hydration points Cenk Andac (Wed May 30 2007 - 16:23:33 CDT)
- AMBER: junk in `Noshake mask` output section Ben Sattelle (Wed May 30 2007 - 16:23:49 CDT)
- Re: AMBER: junk in `Noshake mask` output section David A. Case (Wed May 30 2007 - 16:47:51 CDT)
- Re: AMBER: cutoff & speed-up of GBSA Carlos Simmerling (Wed May 30 2007 - 16:59:41 CDT)
- Re: AMBER: junk in `Noshake mask` output section Ben Sattelle (Wed May 30 2007 - 17:05:20 CDT)
- Re: AMBER: electric field calculation David A. Case (Wed May 30 2007 - 18:14:37 CDT)
- Re: AMBER: error in running sander devrani mitra (Wed May 30 2007 - 18:34:41 CDT)
- Re: AMBER: error in running sander devrani mitra (Wed May 30 2007 - 18:39:47 CDT)
- AMBER: LES Urszula Uciechowska (Thu May 31 2007 - 07:57:26 CDT)
- Re: AMBER: LES Carlos Simmerling (Thu May 31 2007 - 08:17:02 CDT)
- Re: AMBER: electric field calculation lishan yao (Thu May 31 2007 - 08:33:20 CDT)
- Re: AMBER: LES Urszula Uciechowska (Thu May 31 2007 - 08:29:27 CDT)
- Re: AMBER: LES Carlos Simmerling (Thu May 31 2007 - 08:35:57 CDT)
- AMBER: RESTRAINTMASK Roberto Veiga (Thu May 31 2007 - 09:29:26 CDT)
- AMBER: Solvent models Francesco Pietra (Thu May 31 2007 - 10:23:56 CDT)
- Re: AMBER: RESTRAINTMASK David A. Case (Thu May 31 2007 - 10:59:42 CDT)
- Re: AMBER: electric field calculation David A. Case (Thu May 31 2007 - 11:44:34 CDT)
- AMBER: Reg restraint value obtained during umbrella sampling D.Usharani (Thu May 31 2007 - 12:22:21 CDT)
- Re: AMBER: Reg restraint value obtained during umbrella sampling Jerome.GOLEBIOWSKI_at_unice.fr (Thu May 31 2007 - 13:02:45 CDT)
- Re: AMBER: Reg restraint value obtained during umbrella sampling D.Usharani (Thu May 31 2007 - 13:28:50 CDT)
- Re: AMBER: Reg restraint value obtained during umbrella sampling David A. Case (Thu May 31 2007 - 14:17:53 CDT)
- Re: AMBER: cutoff & speed-up of GBSA Wei Chen (Thu May 31 2007 - 15:18:09 CDT)
- Re: AMBER: cutoff & speed-up of GBSA Carlos Simmerling (Thu May 31 2007 - 15:30:00 CDT)
- Re: AMBER: cutoff & speed-up of GBSA David A. Case (Thu May 31 2007 - 15:31:42 CDT)
- Re: AMBER: Solvent models FyD (Thu May 31 2007 - 15:41:24 CDT)
- Re: AMBER: Reg restraint value obtained during umbrella sampling David A. Case (Thu May 31 2007 - 15:39:39 CDT)
- Re: AMBER: cutoff & speed-up of GBSA Wei Chen (Thu May 31 2007 - 15:50:54 CDT)
- Re: AMBER: cutoff & speed-up of GBSA Julien Michel (Thu May 31 2007 - 16:24:11 CDT)
- AMBER: les/nudged elastic band Tamara Rogers (Thu May 31 2007 - 18:20:21 CDT)
- RE: AMBER: les/nudged elastic band Ross Walker (Thu May 31 2007 - 18:59:25 CDT)
Last message date: Mon Dec 31 2007 - 15:27:41 CST
Archived on: Thu Jan 10 2008 - 17:13:09 CST
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