AMBER Archive (2007)

Subject: AMBER: Average PDB - Unusual Bonds

From: Seth Lilavivat (sethl_at_gatech.edu)
Date: Fri May 04 2007 - 09:12:25 CDT

Dear Amber Users,

I when I use ptraj to create an average stucture of several MD or annealing runs
with a NA structure, the structure has some unusual bond connectivity. I can
load the structure into leap and it looks fine, but in VMD and Rasmol it looks
the same. Has anyone else experienced such behavior?

Thanks,
Seth
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