AMBER Archive (2007)

Subject: AMBER: Umbrella Sampling for the twist angle of a DNA base pairs

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Dear All,

Did anyone got experiences on constructing a umbrella sampling for
the twist angle of a flanking DNA base pairs. Should I change the dihedral
angle of four atoms? or Should I change the center of mass for two flanking
base pairs instead?

Best regards
CAt

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• Next message: Catein Catherine: "AMBER: (no subject)"
• Previous message: Sandeep Kaushik: "AMBER: Atomic positional Fluctuations"
• In reply to: Catein Catherine: "AMBER: Umbrella Sampling for the twist angle of a DNA base pairs"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]