AMBER Archive (2007)

Subject: Re: AMBER: antechamber

From: Scott Brozell (sbrozell_at_scripps.edu)
Date: Fri May 11 2007 - 17:46:24 CDT

Hi,

On Fri, 11 May 2007, Santanu Roy wrote:

> I want to make a parameter file by using antechamber .
> Basically I want to create a prepin and a frcmod file using antechamber. My
> system is truncated Zn(II) containing active site of thermolysin with
> PHQ-DTH inhibitor. H atoms have been added to satisfy the valency of the
> system. But while running Antechamber, I faced some problem , it stopped
> running.
>
> I am attaching the input pdb file, along with the output file. Please check
> and tell me whether antechamber can be run on this system or not. If not,
> then what should be the procedure to make the corresponding parameter file.

There were no attachments.

Presumably, you have goooggled the reflector archives for comments
on metals and read the antechamber tutorial:
http://amber.scripps.edu/tutorials/basic/tutorial4/index.htm

Scott

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