AMBER Archive (2007)

Subject: AMBER: antechamber

From: Santanu Roy (san9roy_at_gmail.com)
Date: Fri May 11 2007 - 08:40:24 CDT

Dear Sir,
               I want to make a parameter file by using antechamber .
Basically I want to create a prepin and a frcmod file using antechamber. My
system is truncated Zn(II) containing active site of thermolysin with
PHQ-DTH inhibitor. H atoms have been added to satisfy the valency of the
system. But while running Antechamber, I faced some problem , it stopped
running.

 I am attaching the input pdb file, along with the output file. Please check
and tell me whether antechamber can be run on this system or not. If not,
then what should be the procedure to make the corresponding parameter file.

Regards
Santanu

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