AMBER Archive (2007)

Subject: AMBER: divcon missing in Antechamber 1.27

From: Neelanjana Sengupta (senguptan_at_gmail.com)
Date: Mon May 28 2007 - 19:54:18 CDT


Hi Amber experts,

I downloaded Antechamber Version 1.27 from the Amber website. It looks like
divcon is missing from this version... When I try Ross Walker's tutorial
with sustiva, ie. I type the command,

$AMBERHOME/exe/antechamber -i sustiva.pdb -fi pdb -o sustiva.prepin -fo
prepi -c bcc -s 2

I get this output:
====================
Running: /w1/antech127/exe/bondtype -i ANTECHAMBER_BOND_TYPE.AC0 -o
ANTECHAMBER_BOND_TYPE.AC -f ac -j full

Running: /w1/antech127/exe/atomtype -i ANTECHAMBER_AC.AC0 -o
ANTECHAMBER_AC.AC -p gaff

Total number of electrons: 160; net charge: 0

Running: $AMBERHOME/exe/divcon
sh: /w1/antech127/exe/divcon: No such file or directory
Error: cannot run "$AMBERHOME/exe/divcon" of bcc() in charge.c properly,
exit
====================
Please let me know what the issue is here...

Thanks,
Neelanjana Sengupta

--

----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to amber_at_scripps.edu To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu