AMBER Archive (2007)

Subject: RE: AMBER: antechamber question

From: Junmei Wang (jwang_at_encysive.com)
Date: Tue May 22 2007 - 10:08:18 CDT

This is not an error or warning, it is just for information purpose.

All the best

Junmei
 

From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf
Of Yao Xin
Sent: Tuesday, May 22, 2007 8:40 AM
To: amber_at_scripps.edu
Subject: AMBER: antechamber question

Dear Amber Team,

I am making a .off file for a modified nucleotide.

>antechamber -i odup.log -fi gout -o OdU_gaff.ac -fo ac

it said:
"Bond types are assigned for valence state 4 with penalty of
2."
Could you tell me what does this message mean? Do I need
to fix some error? Thank you for your help.

Best Wishes,
Yao Xin

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