AMBER Archive (2008) - Oct 2008 By DateMost recent messages
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Starting: Wed Oct 01 2008 - 01:14:39 CDT
Ending: Fri Oct 31 2008 - 22:38:15 CDT
- Re: AMBER: Ac-Co Parameters for Amber FyD (Wed Oct 01 2008 - 01:14:39 CDT)
- Re: AMBER: Ac-Co Parameters for Amber suhaib sh (Wed Oct 01 2008 - 04:05:31 CDT)
- AMBER: F modified RNA is split in two parts when running sander simulated annealing Peter Podbev¹ek (Wed Oct 01 2008 - 04:01:52 CDT)
- Re: AMBER: F modified RNA is split in two parts when running sander simulated annealing Andreas Svrcek-Seiler (Wed Oct 01 2008 - 04:56:38 CDT)
- Re: AMBER: How to set up a water slab in Amber? David A. Case (Wed Oct 01 2008 - 06:51:17 CDT)
- AMBER: Sources of disruption during NVE Naser Alijabbari (Wed Oct 01 2008 - 10:59:29 CDT)
- AMBER: MM-PBSA problem : Use of uninitialized value in multiplicatiom with Amber10 Carra, Claudio (JSC-SK)[USRA] (Wed Oct 01 2008 - 12:05:55 CDT)
- Re: AMBER: Temperature regulation julliane Yoneda (Wed Oct 01 2008 - 12:22:06 CDT)
- Re: AMBER: Temperature regulation Carlos Simmerling (Wed Oct 01 2008 - 12:49:26 CDT)
- AMBER: amber10 installation on sgi_mips Rima Chaudhuri (Wed Oct 01 2008 - 14:05:06 CDT)
- Re: AMBER: amber10 installation on sgi_mips David A. Case (Wed Oct 01 2008 - 14:24:56 CDT)
- Re: AMBER: Sources of disruption during NVE Gustavo Seabra (Wed Oct 01 2008 - 14:32:06 CDT)
- Re: AMBER: amber10 installation on sgi_mips Rima Chaudhuri (Wed Oct 01 2008 - 15:47:14 CDT)
- Re: AMBER: Ac-Co Parameters for Amber FyD (Wed Oct 01 2008 - 16:26:54 CDT)
- Re: AMBER: amber10 installation on sgi_mips Bill Ross (Wed Oct 01 2008 - 17:11:08 CDT)
- Re: AMBER: Temperature regulation julliane Yoneda (Wed Oct 01 2008 - 20:10:27 CDT)
- Re: AMBER: Sources of disruption during NVE Naser Alijabbari (Wed Oct 01 2008 - 20:10:43 CDT)
- Re: AMBER: Temperature regulation Carlos Simmerling (Wed Oct 01 2008 - 21:04:36 CDT)
- Re: AMBER: amber10 installation on sgi_mips Rima Chaudhuri (Wed Oct 01 2008 - 21:31:06 CDT)
- Re: AMBER: Ac-Co Parameters for Amber suhaib sh (Thu Oct 02 2008 - 04:34:08 CDT)
- Re: AMBER: amber10 installation on sgi_mips Atro Tossavainen (Thu Oct 02 2008 - 04:59:34 CDT)
- RE: AMBER: F modified RNA is split in two parts when running sander simulated annealing Peter Podbev¹ek (Thu Oct 02 2008 - 08:08:51 CDT)
- AMBER: thermodynamic integration with Amber9 Sadhna Rana (Thu Oct 02 2008 - 10:12:47 CDT)
- RE: AMBER: thermodynamic integration with Amber9 Ross Walker (Thu Oct 02 2008 - 10:24:01 CDT)
- Re: AMBER: Leap atoms CL and OXT do not have a type Francesco Pietra (Thu Oct 02 2008 - 10:47:31 CDT)
- RE: AMBER: thermodynamic integration with Amber9 Sadhna Rana (Thu Oct 02 2008 - 11:08:27 CDT)
- Re: AMBER: amber10 installation on sgi_mips Rima Chaudhuri (Thu Oct 02 2008 - 11:42:25 CDT)
- Re: AMBER: amber10 installation on sgi_mips Bill Ross (Thu Oct 02 2008 - 12:05:17 CDT)
- RE: AMBER: thermodynamic integration with Amber9 Ross Walker (Thu Oct 02 2008 - 12:10:57 CDT)
- Re: AMBER: Leap atoms CL and OXT do not have a type Bill Ross (Thu Oct 02 2008 - 12:36:58 CDT)
- AMBER: Oct 6 deadline for ACS computational chemistry awards Carlos Simmerling (Thu Oct 02 2008 - 12:45:35 CDT)
- Re: AMBER: Leap atoms CL and OXT do not have a type Francesco Pietra (Thu Oct 02 2008 - 14:15:54 CDT)
- Re: AMBER: amber10 installation on sgi_mips Atro Tossavainen (Thu Oct 02 2008 - 14:39:33 CDT)
- Re: AMBER: Leap atoms CL and OXT do not have a type Bill Ross (Thu Oct 02 2008 - 15:09:53 CDT)
- AMBER: Support for intel mpi in pmemd 10; better support for intel MKL Robert Duke (Thu Oct 02 2008 - 15:56:07 CDT)
- Re: AMBER: Support for intel mpi in pmemd 10; better support for intel MKL Francesco Pietra (Thu Oct 02 2008 - 16:35:45 CDT)
- Re: AMBER: Support for intel mpi in pmemd 10; better support for intel MKL Robert Duke (Thu Oct 02 2008 - 17:39:28 CDT)
- AMBER: shake the molecule amit jain (Fri Oct 03 2008 - 00:26:33 CDT)
- Re: AMBER: Sources of disruption during NVE Gustavo Seabra (Fri Oct 03 2008 - 08:39:05 CDT)
- Re: AMBER: Sources of disruption during NVE Bill Ross (Fri Oct 03 2008 - 10:27:37 CDT)
- Re: AMBER: Support for intel mpi in pmemd 10; better support for intel MKL Robert Duke (Fri Oct 03 2008 - 10:43:22 CDT)
- AMBER: amber10 on SiCortex hardware Peter Varnai (Fri Oct 03 2008 - 11:27:21 CDT)
- Re: AMBER: shake the molecule David A. Case (Fri Oct 03 2008 - 11:28:32 CDT)
- AMBER: ptraj average structure Yunierkis Perez Castillo (Sat Oct 04 2008 - 08:25:42 CDT)
- Re: AMBER: ptraj average structure Carlos Simmerling (Sat Oct 04 2008 - 08:55:31 CDT)
- RE: AMBER: ptraj average structure Ross Walker (Sat Oct 04 2008 - 09:55:51 CDT)
- AMBER: Parameters for alkali cations and halogen anions Francesco Pietra (Sun Oct 05 2008 - 02:29:45 CDT)
- AMBER: MM_PBSA problems in AMBER9 Å·ÑôµÂ·½ (Sun Oct 05 2008 - 16:30:12 CDT)
- Re: AMBER: MM_PBSA problems in AMBER9 Ray Luo (Sun Oct 05 2008 - 22:20:01 CDT)
- Re: AMBER: MM_PBSA problems in AMBER9 Alessandro Nascimento (Mon Oct 06 2008 - 08:04:37 CDT)
- RE: AMBER: MM_PBSA problems in AMBER9 Å·ÑôµÂ·½ (Tue Oct 07 2008 - 00:19:54 CDT)
- RE: AMBER: MM_PBSA problems in AMBER9 Å·ÑôµÂ·½ (Tue Oct 07 2008 - 00:19:54 CDT)
- AMBER: internal energy INT is not zero from MM_GBSA Fan Yanping (Tue Oct 07 2008 - 01:08:14 CDT)
- AMBER: internal energy INT is not zero from MM_GBSA flyanping (Tue Oct 07 2008 - 01:18:49 CDT)
- AMBER: Amber heme parameters Shaikh Abdul R S Ramaju (Tue Oct 07 2008 - 01:31:34 CDT)
- AMBER: Zn2+ Bondi radius value Sergey Samsonov (Tue Oct 07 2008 - 03:50:10 CDT)
- Re: AMBER: Amber heme parameters sobereva (Tue Oct 07 2008 - 09:02:12 CDT)
- Re: AMBER: internal energy INT is not zero from MM_GBSA sobereva (Tue Oct 07 2008 - 09:22:57 CDT)
- AMBER: Once again, with feeling --- Support for intel mpi in pmemd 10; better support for intel MKL Robert Duke (Tue Oct 07 2008 - 12:02:51 CDT)
- AMBER: Question on Urea box Antonios Samiotakis (Tue Oct 07 2008 - 14:31:44 CDT)
- Re: AMBER: Once again, with feeling --- Support for intel mpi in pmemd 10; better support for intel MKL David A. Case (Tue Oct 07 2008 - 16:05:07 CDT)
- RE: AMBER: Amber heme parameters Shaikh Abdul R S Ramaju (Wed Oct 08 2008 - 01:38:59 CDT)
- AMBER: saveamberparm error Shaikh Abdul R S Ramaju (Wed Oct 08 2008 - 06:33:31 CDT)
- Re: AMBER: Zn2+ Bondi radius value Enguerran Vanquelef (Wed Oct 08 2008 - 06:55:21 CDT)
- AMBER: AMBER force field for glycolipid Stephane Abel (Wed Oct 08 2008 - 07:25:12 CDT)
- RE: AMBER: saveamberparm error Ross Walker (Wed Oct 08 2008 - 10:23:12 CDT)
- AMBER: ptraj - closest command Ryan Pavlovicz (Wed Oct 08 2008 - 12:36:17 CDT)
- Re: AMBER: Temperature regulation julliane Yoneda (Wed Oct 08 2008 - 12:52:52 CDT)
- AMBER: Jmol 11.7.1 pre-release version reads AMBER trajectory/coordinate files Robert Hanson (Wed Oct 08 2008 - 13:16:55 CDT)
- Re: AMBER: Jmol 11.7.1 pre-release version reads AMBER trajectory/coordinate files FyD (Wed Oct 08 2008 - 14:00:33 CDT)
- AMBER: velocity-verlet algorithm and ensembles oguz gurbulak (Wed Oct 08 2008 - 13:59:46 CDT)
- Re: AMBER: ptraj - closest command Jianyin Shao (Wed Oct 08 2008 - 14:50:29 CDT)
- Re: AMBER: ptraj - closest command Ryan Pavlovicz (Wed Oct 08 2008 - 15:49:08 CDT)
- Re: AMBER: Jmol 11.7.1 pre-release version reads AMBER trajectory/coordinate files Robert Hanson (Wed Oct 08 2008 - 15:55:26 CDT)
- Re: AMBER: xleap fails to savemol2 taufik.alsarraj_at_utoronto.ca (Wed Oct 08 2008 - 16:57:30 CDT)
- RE: AMBER: saveamberparm error Shaikh Abdul R S Ramaju (Wed Oct 08 2008 - 21:24:58 CDT)
- Re: AMBER: ptraj - closest command sobereva (Wed Oct 08 2008 - 21:49:46 CDT)
- Re: AMBER: xleap fails to savemol2 FyD (Thu Oct 09 2008 - 01:54:05 CDT)
- Re: AMBER: saveamberparm error Wei Zhang (Thu Oct 09 2008 - 05:22:45 CDT)
- RE: AMBER: saveamberparm error Shaikh Abdul R S Ramaju (Thu Oct 09 2008 - 05:53:35 CDT)
- Re: AMBER: velocity-verlet algorithm and ensembles David A. Case (Thu Oct 09 2008 - 07:46:08 CDT)
- RE: AMBER: AMBER force field for glycolipid Matthew Tessier (Thu Oct 09 2008 - 08:57:59 CDT)
- Re: AMBER: Jmol 11.7.1 pre-release version reads AMBER trajectory/coordinate files Robert Hanson (Thu Oct 09 2008 - 08:59:20 CDT)
- Re: AMBER: AMBER force field for glycolipid Stephane Abel (Thu Oct 09 2008 - 09:08:49 CDT)
- Re: AMBER: Jmol 11.7.1 pre-release version reads AMBER trajectory/coordinate files Robert Hanson (Thu Oct 09 2008 - 11:30:32 CDT)
- Fwd: Re: AMBER: Jmol 11.7.1 pre-release version reads AMBER trajectory/coordinate files FyD (Thu Oct 09 2008 - 11:57:07 CDT)
- Re: [Jmol-users] AMBER: Jmol 11.7.1 pre-release version reads AMBER trajectory/coordinate files Robert Hanson (Thu Oct 09 2008 - 18:12:52 CDT)
- AMBER: changing pdb structure taufik.alsarraj_at_utoronto.ca (Thu Oct 09 2008 - 21:35:07 CDT)
- Re: AMBER: changing pdb structure Robert Hanson (Thu Oct 09 2008 - 22:23:48 CDT)
- RE: AMBER: changing pdb structure Ross Walker (Thu Oct 09 2008 - 22:29:24 CDT)
- Re: AMBER: changing pdb structure Sasha Buzko (Thu Oct 09 2008 - 22:48:43 CDT)
- AMBER: nscm code Naser Alijabbari (Fri Oct 10 2008 - 00:05:59 CDT)
- Re: AMBER: nscm code Carlos Simmerling (Fri Oct 10 2008 - 05:32:25 CDT)
- AMBER: Question about resp charges for a charged molecule... Alberto Sergio Garay (Fri Oct 10 2008 - 05:54:22 CDT)
- AMBER: AddIons approach parul sharma (Fri Oct 10 2008 - 06:13:51 CDT)
- Re: AMBER: AddIons approach Carlos Simmerling (Fri Oct 10 2008 - 06:17:08 CDT)
- Re: AMBER: Question about resp charges for a charged molecule... Germain Vallverdu (Fri Oct 10 2008 - 06:20:45 CDT)
- Re: AMBER: AddIons approach Germain Vallverdu (Fri Oct 10 2008 - 06:23:00 CDT)
- AMBER: Radius of Gyration Beale, John (Fri Oct 10 2008 - 06:27:22 CDT)
- Re: AMBER: nscm code Andreas Svrcek-Seiler (Fri Oct 10 2008 - 06:37:09 CDT)
- Re: AMBER: AddIons approach parul sharma (Fri Oct 10 2008 - 06:44:41 CDT)
- Re: AMBER: Radius of Gyration Carlos Simmerling (Fri Oct 10 2008 - 06:48:21 CDT)
- Re: AMBER: AddIons approach David A. Case (Fri Oct 10 2008 - 06:52:52 CDT)
- Re: AMBER: Question about resp charges for a charged molecule... FyD (Fri Oct 10 2008 - 08:37:48 CDT)
- Re: AMBER: changing pdb structure Ibrahim Moustafa (Fri Oct 10 2008 - 09:24:30 CDT)
- AMBER: Ring flips Beale, John (Fri Oct 10 2008 - 12:09:52 CDT)
- Re: AMBER: Ring flips David Watson (Fri Oct 10 2008 - 12:30:37 CDT)
- Re: AMBER: Ring flips David Watson (Fri Oct 10 2008 - 12:36:36 CDT)
- AMBER: antechamber dipti lele (Sat Oct 11 2008 - 23:43:33 CDT)
- Re: AMBER: changing pdb structure Sally Pias (Sun Oct 12 2008 - 00:00:38 CDT)
- AMBER: removing COM and rotation in explicit solvation Naser Alijabbari (Sun Oct 12 2008 - 15:02:22 CDT)
- Re: AMBER: removing COM and rotation in explicit solvation David A. Case (Sun Oct 12 2008 - 16:32:54 CDT)
- AMBER: pairwise interaction energies Thomas Leonard (Mon Oct 13 2008 - 01:12:11 CDT)
- AMBER: PDB standards Francesco Pietra (Mon Oct 13 2008 - 03:18:23 CDT)
- AMBER: Ptraj pucker for pyranose Neha Gandhi (Mon Oct 13 2008 - 04:43:33 CDT)
- Re: AMBER: pairwise interaction energies Alessandro Nascimento (Mon Oct 13 2008 - 05:35:39 CDT)
- AMBER: question about pression Yunierkis Perez Castillo (Mon Oct 13 2008 - 09:45:38 CDT)
- Re: AMBER: question about pression David A. Case (Mon Oct 13 2008 - 09:55:57 CDT)
- RE: AMBER: question about pression Yunierkis Perez Castillo (Mon Oct 13 2008 - 10:33:45 CDT)
- AMBER: LEU as first residue Francesco Pietra (Mon Oct 13 2008 - 11:20:00 CDT)
- AMBER: amber: parameters for 5' nucleotide monophosphates Jeff Schwinefus (Mon Oct 13 2008 - 12:52:55 CDT)
- Re: AMBER: amber: parameters for 5' nucleotide monophosphates FyD (Mon Oct 13 2008 - 14:44:47 CDT)
- Re: AMBER: antechamber David A. Case (Mon Oct 13 2008 - 17:43:00 CDT)
- AMBER: High Bfactor values for the terminal residues/atoms Siddharth Rastogi (Mon Oct 13 2008 - 23:19:52 CDT)
- AMBER: large number of solvent molecules were added for protein with 221 AA residues Siddharth Rastogi (Mon Oct 13 2008 - 23:34:58 CDT)
- AMBER: antechamber test failure john smith (Tue Oct 14 2008 - 00:47:28 CDT)
- AMBER: Segmentation fault hklwatergod (Tue Oct 14 2008 - 01:52:36 CDT)
- Re: Re: RE: AMBER: the install problem hklwatergod (Tue Oct 14 2008 - 02:19:02 CDT)
- Re: AMBER: large number of solvent molecules were added for protein with 221 AA residues Carlos Simmerling (Tue Oct 14 2008 - 05:21:46 CDT)
- Re: AMBER: High Bfactor values for the terminal residues/atoms Carlos Simmerling (Tue Oct 14 2008 - 05:25:25 CDT)
- AMBER: LEaP problem with LEU first residue? Francesco Pietra (Tue Oct 14 2008 - 05:26:25 CDT)
- Re: AMBER: LEaP problem with LEU first residue? Carlos Simmerling (Tue Oct 14 2008 - 05:41:01 CDT)
- Re: AMBER: LEaP problem with LEU first residue? Francesco Pietra (Tue Oct 14 2008 - 08:42:55 CDT)
- RE: AMBER: Segmentation fault Ross Walker (Tue Oct 14 2008 - 09:53:08 CDT)
- AMBER: amber10 installation problem in cygwin vijayaraj_at_clri.res.in (Tue Oct 14 2008 - 10:21:19 CDT)
- Re: AMBER: amber10 installation problem in cygwin Gustavo Seabra (Tue Oct 14 2008 - 10:56:20 CDT)
- RE: AMBER: amber10 installation problem in cygwin Ross Walker (Tue Oct 14 2008 - 11:32:06 CDT)
- AMBER: Amber dipole printout. Zhao, Zhen (zhaozh) (Tue Oct 14 2008 - 12:25:40 CDT)
- Fwd: AMBER: LEaP problem with LEU first residue? Francesco Pietra (Tue Oct 14 2008 - 12:58:33 CDT)
- Re: AMBER: Amber dipole printout. Dave Rogers (Tue Oct 14 2008 - 13:14:21 CDT)
- Re: AMBER: xleap fails to savemol2 FyD (Tue Oct 14 2008 - 14:15:48 CDT)
- RE: AMBER: Amber dipole printout. Ross Walker (Tue Oct 14 2008 - 15:05:38 CDT)
- Re: AMBER: changing pdb structure Taufik Al-Sarraj (Tue Oct 14 2008 - 15:26:33 CDT)
- Re: Fwd: AMBER: LEaP problem with LEU first residue? Scott Brozell (Tue Oct 14 2008 - 16:46:36 CDT)
- Re: Fwd: AMBER: LEaP problem with LEU first residue? Francesco Pietra (Tue Oct 14 2008 - 17:58:08 CDT)
- AMBER: Installation Error Jagan Mohan (Wed Oct 15 2008 - 02:50:18 CDT)
- Re: AMBER: Installation Error Scott Brozell (Wed Oct 15 2008 - 03:05:48 CDT)
- Re: AMBER: Installation Error Jagan Mohan (Wed Oct 15 2008 - 03:51:03 CDT)
- Re: Re: AMBER: Installation Error Ye Mei (Wed Oct 15 2008 - 03:54:57 CDT)
- AMBER: Amber10: Problem with tgtmd and ncsu testing Dmitri Nilov (Wed Oct 15 2008 - 08:00:11 CDT)
- Re: AMBER: antechamber test failure David A. Case (Wed Oct 15 2008 - 08:16:06 CDT)
- Re: AMBER: LEaP problem with LEU first residue? David A. Case (Wed Oct 15 2008 - 08:18:58 CDT)
- Re: AMBER: Installation Error Gustavo Seabra (Wed Oct 15 2008 - 08:21:14 CDT)
- Re: AMBER: Installation Error David A. Case (Wed Oct 15 2008 - 08:35:19 CDT)
- Re: AMBER: Installation Error Jagan Mohan (Wed Oct 15 2008 - 09:03:04 CDT)
- AMBER: Origin of periodic box Naser Alijabbari (Wed Oct 15 2008 - 20:34:00 CDT)
- RE: AMBER: Origin of periodic box Ross Walker (Wed Oct 15 2008 - 20:57:47 CDT)
- Re: AMBER: antechamber test failure john smith (Thu Oct 16 2008 - 00:53:50 CDT)
- AMBER: Differentiating the force constant of distance restraints Francesca Poletti (Thu Oct 16 2008 - 03:40:16 CDT)
- Re: AMBER: Differentiating the force constant of distance restraints Germain Vallverdu (Thu Oct 16 2008 - 04:07:07 CDT)
- AMBER: regarding rigid molecules aneesh cna (Thu Oct 16 2008 - 04:34:36 CDT)
- Re: AMBER: antechamber test failure David A. Case (Thu Oct 16 2008 - 06:04:13 CDT)
- Re: AMBER: regarding rigid molecules Germain Vallverdu (Thu Oct 16 2008 - 06:02:49 CDT)
- Re: AMBER: regarding rigid molecules David A. Case (Thu Oct 16 2008 - 06:06:42 CDT)
- Re: AMBER: regarding rigid molecules Steven Winfield (Thu Oct 16 2008 - 06:30:31 CDT)
- Re: AMBER: Origin of periodic box Gustavo Seabra (Thu Oct 16 2008 - 08:24:50 CDT)
- Re: AMBER: regarding rigid molecules Gustavo Seabra (Thu Oct 16 2008 - 08:34:56 CDT)
- RE: AMBER: regarding rigid molecules Ross Walker (Thu Oct 16 2008 - 09:53:29 CDT)
- Re: AMBER: regarding rigid molecules Gustavo Seabra (Thu Oct 16 2008 - 10:16:39 CDT)
- AMBER: Clarification re qmmask Benjamin Roberts (Thu Oct 16 2008 - 12:24:45 CDT)
- RE: AMBER: Clarification re qmmask Ross Walker (Thu Oct 16 2008 - 13:14:04 CDT)
- Re: AMBER: Clarification re qmmask Gustavo Seabra (Thu Oct 16 2008 - 13:22:41 CDT)
- AMBER: antechamber Marcela Madrid (Thu Oct 16 2008 - 15:37:07 CDT)
- AMBER: Using charmm force field in amber Harry (Yicun) Ni (Thu Oct 16 2008 - 16:20:45 CDT)
- Re: AMBER: antechamber David A. Case (Thu Oct 16 2008 - 16:25:17 CDT)
- RE: AMBER: Using charmm force field in amber Ross Walker (Thu Oct 16 2008 - 16:44:30 CDT)
- Re: AMBER: Using charmm force field in amber David A. Case (Thu Oct 16 2008 - 16:51:45 CDT)
- AMBER: capping with non charged residues Francesco Pietra (Thu Oct 16 2008 - 17:24:44 CDT)
- AMBER: antechamber errors oguz gurbulak (Fri Oct 17 2008 - 08:07:37 CDT)
- Re: AMBER: antechamber errors David A. Case (Fri Oct 17 2008 - 09:20:51 CDT)
- AMBER: Restricting the system to simulate Francesco Pietra (Fri Oct 17 2008 - 11:00:50 CDT)
- AMBER: NAD+ parameters problem using tleap Dmitri Nilov (Fri Oct 17 2008 - 11:24:50 CDT)
- RE: AMBER: NAD+ parameters problem using tleap Ross Walker (Fri Oct 17 2008 - 13:16:41 CDT)
- AMBER: using ptraj Adrien Delmont (Fri Oct 17 2008 - 16:44:16 CDT)
- AMBER: How to assign /make the ionion bond? Chih-Ying Lin (Fri Oct 17 2008 - 17:30:07 CDT)
- Re: AMBER: How to assign /make the ionion bond? steinbrt_at_rci.rutgers.edu (Fri Oct 17 2008 - 18:06:26 CDT)
- Re: AMBER: using ptraj Gustavo Seabra (Fri Oct 17 2008 - 20:35:23 CDT)
- Fwd: AMBER: Restricting the system to simulate Francesco Pietra (Sat Oct 18 2008 - 02:44:19 CDT)
- AMBER: REDvIII_I_lack_of_charges_in_mol2 Karol Kaszuba (Sat Oct 18 2008 - 06:08:53 CDT)
- Re: AMBER: REDvIII_I_lack_of_charges_in_mol2 FyD (Sat Oct 18 2008 - 06:54:56 CDT)
- Re: AMBER: REDvIII_I_lack_of_charges_in_mol2 Karol Kaszuba (Sat Oct 18 2008 - 11:32:58 CDT)
- Re: AMBER: REDvIII_I_lack_of_charges_in_mol2 FyD (Sat Oct 18 2008 - 16:30:33 CDT)
- Re: AMBER: REDvIII_I_lack_of_charges_in_mol2 Karol Kaszuba (Sun Oct 19 2008 - 01:57:23 CDT)
- Re: AMBER: REDvIII_I_lack_of_charges_in_mol2 FyD (Sun Oct 19 2008 - 03:12:03 CDT)
- Re: AMBER: REDvIII_I_lack_of_charges_in_mol2 Karol Kaszuba (Sun Oct 19 2008 - 08:00:35 CDT)
- AMBER: Addions in GB Mode? Rogelio Hernández (Sun Oct 19 2008 - 12:04:32 CDT)
- AMBER: question about simulation box Adrien Delmont (Sun Oct 19 2008 - 16:04:24 CDT)
- Re: AMBER: LEaP problem with LEU first residue? KazuoOhta (Sun Oct 19 2008 - 22:04:38 CDT)
- Re: AMBER: Addions in GB Mode? parul sharma (Mon Oct 20 2008 - 04:25:22 CDT)
- Re: AMBER: Addions in GB Mode? Carlos Simmerling (Mon Oct 20 2008 - 05:12:52 CDT)
- Re: AMBER: LEaP problem with LEU first residue? David A. Case (Mon Oct 20 2008 - 06:00:09 CDT)
- AMBER: Error in creating topology file musa özboyacý (Mon Oct 20 2008 - 06:00:48 CDT)
- Re: AMBER: Error in creating topology file Wei Zhang (Mon Oct 20 2008 - 07:34:40 CDT)
- Re: AMBER: question about simulation box Gustavo Seabra (Mon Oct 20 2008 - 08:09:03 CDT)
- AMBER: Contacts Beale, John (Mon Oct 20 2008 - 09:29:06 CDT)
- AMBER: about SASA and AMBER Yunierkis Perez Castillo (Mon Oct 20 2008 - 10:58:06 CDT)
- AMBER: mm_pbsa_statistics / 3 traj Arturas Ziemys (Mon Oct 20 2008 - 11:18:26 CDT)
- Re: AMBER: about SASA and AMBER Lachele Foley (Lists) (Mon Oct 20 2008 - 12:07:06 CDT)
- Re: AMBER: about SASA and AMBER Carlos Simmerling (Mon Oct 20 2008 - 12:17:42 CDT)
- AMBER: drug/protein interaction modeling setup Sean Johnston (Mon Oct 20 2008 - 15:10:52 CDT)
- Re: AMBER: drug/protein interaction modeling setup Alessandro Nascimento (Mon Oct 20 2008 - 15:21:05 CDT)
- AMBER: cnstph test case failure or expected divergence? Melinda Layten (Mon Oct 20 2008 - 15:23:08 CDT)
- Re: AMBER: drug/protein interaction modeling setup Barbault Florent (Mon Oct 20 2008 - 15:37:24 CDT)
- RE: AMBER: cnstph test case failure or expected divergence? Ross Walker (Mon Oct 20 2008 - 15:41:27 CDT)
- Re: AMBER: drug/protein interaction modeling setup Bill Ross (Mon Oct 20 2008 - 17:39:04 CDT)
- AMBER: scyld beowulf --amber10--openmpi Rima Chaudhuri (Mon Oct 20 2008 - 19:00:27 CDT)
- RE: AMBER: scyld beowulf --amber10--openmpi Ross Walker (Mon Oct 20 2008 - 20:38:04 CDT)
- Re: AMBER: scyld beowulf --amber10--openmpi Rima Chaudhuri (Mon Oct 20 2008 - 20:46:13 CDT)
- Re: AMBER: scyld beowulf --amber10--openmpi Gustavo Seabra (Mon Oct 20 2008 - 21:56:35 CDT)
- AMBER: Heme cysteine Shaikh Abdul R S Ramaju (Tue Oct 21 2008 - 02:16:50 CDT)
- AMBER: input Urszula Uciechowska (Tue Oct 21 2008 - 04:14:28 CDT)
- Re: AMBER: input Germain Vallverdu (Tue Oct 21 2008 - 04:36:40 CDT)
- AMBER: equilibration Urszula Uciechowska (Tue Oct 21 2008 - 05:44:54 CDT)
- Re: AMBER: equilibration Carlos Simmerling (Tue Oct 21 2008 - 06:01:54 CDT)
- Re: AMBER: equilibration Carlos Simmerling (Tue Oct 21 2008 - 06:20:13 CDT)
- Re: AMBER: equilibration Urszula Uciechowska (Tue Oct 21 2008 - 06:17:08 CDT)
- Re: AMBER: equilibration Urszula Uciechowska (Tue Oct 21 2008 - 06:28:17 CDT)
- Re: AMBER: equilibration Carlos Simmerling (Tue Oct 21 2008 - 06:30:12 CDT)
- Re: AMBER: question about simulation box Adrien Delmont (Tue Oct 21 2008 - 08:43:24 CDT)
- AMBER: ptraj John Bennett (Tue Oct 21 2008 - 09:32:07 CDT)
- RE: AMBER: Heme cysteine Ross Walker (Tue Oct 21 2008 - 10:17:08 CDT)
- Re: AMBER: cnstph test case failure or expected divergence? Melinda Layten (Tue Oct 21 2008 - 10:38:31 CDT)
- AMBER: Does LEaP understant capping with ACE/NME? Francesco Pietra (Tue Oct 21 2008 - 10:57:12 CDT)
- Re: AMBER: Does LEaP understant capping with ACE/NME? Carlos Simmerling (Tue Oct 21 2008 - 11:02:41 CDT)
- Re: AMBER: Heme cysteine Bill Ross (Tue Oct 21 2008 - 11:20:38 CDT)
- AMBER: Again: Installation problem of AMBER on cluster Dmitri Nilov (Tue Oct 21 2008 - 11:31:52 CDT)
- RE: AMBER: Again: Installation problem of AMBER on cluster Ross Walker (Tue Oct 21 2008 - 11:49:50 CDT)
- AMBER: MM_PBSA doesn't terminate Khaled Barakat (Tue Oct 21 2008 - 11:58:12 CDT)
- Re: AMBER: antechamber Marcela Madrid (Tue Oct 21 2008 - 12:02:54 CDT)
- Re: AMBER: Does LEaP understant capping with ACE/NME? Francesco Pietra (Tue Oct 21 2008 - 12:31:36 CDT)
- AMBER: HOLD fixed vs restraint mask Taufik Al-Sarraj (Tue Oct 21 2008 - 13:02:34 CDT)
- RE: AMBER: HOLD fixed vs restraint mask Ross Walker (Tue Oct 21 2008 - 13:33:32 CDT)
- RE: AMBER: Heme cysteine Shaikh Abdul R S Ramaju (Tue Oct 21 2008 - 21:46:09 CDT)
- AMBER: DNA structure analysis Bert (Wed Oct 22 2008 - 06:27:38 CDT)
- Re: AMBER: REDvIII_I_lack_of_charges_in_mol2 FyD (Wed Oct 22 2008 - 10:15:15 CDT)
- AMBER: MM_PBSA doesn't terminate Khaled Barakat (Wed Oct 22 2008 - 10:27:55 CDT)
- AMBER: stripping water from a restart file CHAMI F. (Wed Oct 22 2008 - 11:11:46 CDT)
- AMBER: stripping water from a restart file CHAMI F. (Wed Oct 22 2008 - 11:11:46 CDT)
- Re: AMBER: stripping water from a restart file Carlos Simmerling (Wed Oct 22 2008 - 11:29:32 CDT)
- Re: AMBER: stripping water from a restart file Bill Ross (Wed Oct 22 2008 - 12:12:29 CDT)
- RE: AMBER: stripping water from a restart file CHAMI F. (Wed Oct 22 2008 - 15:29:45 CDT)
- RE: AMBER: stripping water from a restart file Bill Ross (Wed Oct 22 2008 - 15:38:11 CDT)
- AMBER: installing amber on new linux Jan Goeman (Wed Oct 22 2008 - 16:06:48 CDT)
- AMBER: MM-PBSA -energy decomposition error Cristina Sisu (Wed Oct 22 2008 - 17:07:43 CDT)
- Re: AMBER: installing amber on new linux Scott Brozell (Wed Oct 22 2008 - 18:53:50 CDT)
- AMBER: energy leakage? Sally Pias (Thu Oct 23 2008 - 02:25:59 CDT)
- Re: AMBER: energy leakage? David A. Case (Thu Oct 23 2008 - 06:00:29 CDT)
- RE: AMBER: stripping water from a restart file CHAMI F. (Thu Oct 23 2008 - 06:33:29 CDT)
- AMBER: Metal parameter values musa özboyacý (Thu Oct 23 2008 - 06:59:13 CDT)
- Re: AMBER: stripping water from a restart file Carlos Simmerling (Thu Oct 23 2008 - 07:22:00 CDT)
- RE: AMBER: stripping water from a restart file CHAMI F. (Thu Oct 23 2008 - 07:45:19 CDT)
- Re: AMBER: energy leakage? Sally Pias (Thu Oct 23 2008 - 09:47:28 CDT)
- AMBER: Non bond list error Wang,Ying (Thu Oct 23 2008 - 12:19:49 CDT)
- RE: AMBER: stripping water from a restart file Bill Ross (Thu Oct 23 2008 - 13:13:43 CDT)
- Re: AMBER: Metal parameter values Bill Ross (Thu Oct 23 2008 - 13:23:08 CDT)
- RE: AMBER: Non bond list error Ross Walker (Thu Oct 23 2008 - 13:38:09 CDT)
- Re: AMBER: Metal parameter values musa özboyacý (Thu Oct 23 2008 - 14:09:35 CDT)
- RE: AMBER: Non bond list error Wang,Ying (Thu Oct 23 2008 - 14:26:26 CDT)
- AMBER: pdb structure is only half the molecule. Taufik Al-Sarraj (Thu Oct 23 2008 - 14:42:24 CDT)
- Re: AMBER: Non bond list error Robert Duke (Thu Oct 23 2008 - 15:14:13 CDT)
- RE: AMBER: pdb structure is only half the molecule. Joel Tyndall (Thu Oct 23 2008 - 15:18:36 CDT)
- Re: AMBER: pdb structure is only half the molecule. Gustavo Seabra (Thu Oct 23 2008 - 15:19:05 CDT)
- Re: AMBER: Non bond list error Robert Duke (Thu Oct 23 2008 - 15:44:29 CDT)
- Re: AMBER: Non bond list error Wang,Ying (Thu Oct 23 2008 - 16:58:06 CDT)
- RE: AMBER: stripping water from a restart file CHAMI F. (Thu Oct 23 2008 - 16:59:03 CDT)
- Re: AMBER: stripping water from a restart file Carlos Simmerling (Thu Oct 23 2008 - 17:05:07 CDT)
- RE: AMBER: stripping water from a restart file Bill Ross (Thu Oct 23 2008 - 18:48:59 CDT)
- Re: AMBER: pdb structure is only half the molecule. Ye Mei (Thu Oct 23 2008 - 22:21:59 CDT)
- Re: AMBER: Non bond list error neville forlemu (Thu Oct 23 2008 - 23:48:01 CDT)
- RE: AMBER: Non bond list error Ross Walker (Thu Oct 23 2008 - 23:56:32 CDT)
- RE: AMBER: Non bond list error neville forlemu (Fri Oct 24 2008 - 00:13:13 CDT)
- RE: AMBER: Non bond list error Ross Walker (Fri Oct 24 2008 - 01:12:20 CDT)
- AMBER: problem with running mm-pbsa moitrayee_at_mbu.iisc.ernet.in (Fri Oct 24 2008 - 02:14:49 CDT)
- RE: AMBER: stripping water from a restart file CHAMI F. (Fri Oct 24 2008 - 04:58:58 CDT)
- Re: AMBER: pdb structure is only half the molecule. Florian Haberl (Fri Oct 24 2008 - 05:18:45 CDT)
- AMBER: something puzzled with mm_pbsa TaoPaul (Fri Oct 24 2008 - 05:50:04 CDT)
- AMBER: problem with amber8 installation moitrayee_at_mbu.iisc.ernet.in (Fri Oct 24 2008 - 07:22:40 CDT)
- AMBER: problem with amber8 installation moitrayee_at_mbu.iisc.ernet.in (Fri Oct 24 2008 - 07:20:17 CDT)
- Fw: AMBER: Non bond list error Robert Duke (Fri Oct 24 2008 - 08:20:29 CDT)
- RE: AMBER: problem with amber8 installation Ross Walker (Fri Oct 24 2008 - 09:57:52 CDT)
- RE: AMBER: stripping water from a restart file Bill Ross (Fri Oct 24 2008 - 10:21:59 CDT)
- AMBER: Regarding sleap - documentation and output behavior Keith Van Nostrand (Fri Oct 24 2008 - 10:26:58 CDT)
- Re: AMBER: something puzzled with mm_pbsa Ray Luo (Fri Oct 24 2008 - 11:21:59 CDT)
- Re: AMBER: problem with running mm-pbsa Ray Luo (Fri Oct 24 2008 - 11:24:59 CDT)
- RE: AMBER: Non bond list error neville forlemu (Fri Oct 24 2008 - 11:34:44 CDT)
- Re: AMBER: Non bond list error Robert Duke (Fri Oct 24 2008 - 11:40:24 CDT)
- Re: AMBER: Non bond list error neville forlemu (Fri Oct 24 2008 - 13:12:58 CDT)
- AMBER: Atom names CL and four characters Francesco Pietra (Fri Oct 24 2008 - 13:55:05 CDT)
- Re: AMBER: Non bond list error Robert Duke (Fri Oct 24 2008 - 13:47:33 CDT)
- Re: AMBER: Non bond list error Robert Duke (Fri Oct 24 2008 - 14:04:53 CDT)
- Re: AMBER: Atom names CL and four characters David A. Case (Fri Oct 24 2008 - 14:21:51 CDT)
- Re: AMBER: Non bond list error neville forlemu (Fri Oct 24 2008 - 14:40:08 CDT)
- Re: AMBER: Atom names CL and four characters Francesco Pietra (Fri Oct 24 2008 - 17:44:31 CDT)
- Re: AMBER: pdb structure is only half the molecule. Taufik Al-Sarraj (Fri Oct 24 2008 - 18:15:52 CDT)
- RE: AMBER: something puzzled with mm_pbsa TaoPaul (Fri Oct 24 2008 - 21:08:50 CDT)
- Re: AMBER: problem with running mm-pbsa moitrayee_at_mbu.iisc.ernet.in (Sat Oct 25 2008 - 01:30:11 CDT)
- RE: AMBER: problem with amber8 installation moitrayee_at_mbu.iisc.ernet.in (Sat Oct 25 2008 - 01:36:27 CDT)
- AMBER: Restraining with PMEMD 10 Francesco Pietra (Sat Oct 25 2008 - 04:32:39 CDT)
- AMBER: the question about "RADIOPT" option in mm_pbsa TaoPaul (Sat Oct 25 2008 - 06:11:04 CDT)
- Re: AMBER: Again: Installation problem of AMBER on cluster Dmitri Nilov (Sat Oct 25 2008 - 07:30:43 CDT)
- AMBER: Is it possible to recover the umbrella file in ABMD simulation after hard disk failure? Ye Mei (Sat Oct 25 2008 - 07:32:25 CDT)
- Re: AMBER: Restraining with PMEMD 10 Robert Duke (Sat Oct 25 2008 - 07:57:03 CDT)
- Re: AMBER: problem with amber8 installation David A. Case (Sat Oct 25 2008 - 08:30:30 CDT)
- Re: AMBER: Restraining with PMEMD 10 Francesco Pietra (Sat Oct 25 2008 - 11:33:57 CDT)
- Re: AMBER: Restraining with PMEMD 10 Robert Duke (Sat Oct 25 2008 - 12:12:20 CDT)
- RE: AMBER: Restraining with PMEMD 10 Ross Walker (Sat Oct 25 2008 - 12:25:08 CDT)
- Re: AMBER: Restraining with PMEMD 10 Francesco Pietra (Sat Oct 25 2008 - 13:57:40 CDT)
- AMBER: Conversion between truncated octahedron and orthorohombic box #NGUYEN CONG TRI# (Sat Oct 25 2008 - 21:36:30 CDT)
- RE: AMBER: Conversion between truncated octahedron and orthorohombic box Ross Walker (Sun Oct 26 2008 - 11:56:50 CDT)
- Re: AMBER: installing amber on new linux Jan Goeman (Sun Oct 26 2008 - 19:25:49 CDT)
- AMBER: Duplicate entries with different parameters in gaff.dat from AmberTools 1.2 John Chodera (Sun Oct 26 2008 - 20:16:48 CDT)
- AMBER: atom type for carbon and nitrogen atoms Catein Catherine (Mon Oct 27 2008 - 03:56:06 CDT)
- AMBER: atom type for carbon and nitrogen atoms Catein Catherine (Mon Oct 27 2008 - 03:58:51 CDT)
- AMBER: peptide MD Beale, John (Mon Oct 27 2008 - 10:38:48 CDT)
- AMBER: 2'-5'-branched RNA Volodymyr Zloy (Mon Oct 27 2008 - 11:10:00 CDT)
- RE: AMBER: something puzzled with mm_pbsa Ray Luo (Mon Oct 27 2008 - 11:56:54 CDT)
- Re: AMBER: peptide MD Carlos Simmerling (Mon Oct 27 2008 - 12:05:00 CDT)
- RE: AMBER: peptide MD Beale, John (Mon Oct 27 2008 - 12:13:47 CDT)
- Re: AMBER: Conversion between truncated octahedron and orthorohombic box Gustavo Seabra (Mon Oct 27 2008 - 12:19:59 CDT)
- Re: AMBER: stripping water from a restart file Gustavo Seabra (Mon Oct 27 2008 - 12:12:04 CDT)
- Re: AMBER: atom type for carbon and nitrogen atoms Gustavo Seabra (Mon Oct 27 2008 - 12:28:31 CDT)
- Re: AMBER: peptide MD Carlos Simmerling (Mon Oct 27 2008 - 12:35:57 CDT)
- Re: AMBER: peptide MD Gustavo Seabra (Mon Oct 27 2008 - 12:36:35 CDT)
- RE: AMBER: peptide MD Beale, John (Mon Oct 27 2008 - 12:47:42 CDT)
- Re: AMBER: peptide MD Gustavo Seabra (Mon Oct 27 2008 - 12:52:25 CDT)
- Re: AMBER: peptide MD Carlos Simmerling (Mon Oct 27 2008 - 13:07:11 CDT)
- AMBER: Identification of improper torsions in small molecules parameterized with GAFF by antechamber John Chodera (Mon Oct 27 2008 - 17:12:31 CDT)
- AMBER: aromatic bent ligand Arturas Ziemys (Mon Oct 27 2008 - 21:34:49 CDT)
- AMBER: SPCFW problems Naser Alijabbari (Mon Oct 27 2008 - 21:37:12 CDT)
- Re: AMBER: SPCFW problems David A. Case (Tue Oct 28 2008 - 05:49:37 CDT)
- Re: AMBER: Identification of improper torsions in small molecules parameterized with GAFF by antechamber David A. Case (Tue Oct 28 2008 - 07:57:22 CDT)
- Re: AMBER: SPCFW problems Naser Alijabbari (Tue Oct 28 2008 - 10:50:49 CDT)
- Re: AMBER: Identification of improper torsions in small molecules parameterized with GAFF by antechamber John Chodera (Tue Oct 28 2008 - 10:57:42 CDT)
- AMBER: antechamber bug? produces incorrect NEWPDB.PDB file Robert Hanson (Tue Oct 28 2008 - 11:46:08 CDT)
- Re: AMBER: SPCFW problems David A. Case (Tue Oct 28 2008 - 12:25:23 CDT)
- Re: AMBER: antechamber bug? produces incorrect NEWPDB.PDB file David A. Case (Tue Oct 28 2008 - 12:41:45 CDT)
- Re: AMBER: antechamber bug? produces incorrect NEWPDB.PDB file David A. Case (Tue Oct 28 2008 - 12:57:49 CDT)
- Re: AMBER: SPCFW problems Naser Alijabbari (Tue Oct 28 2008 - 12:57:59 CDT)
- Re: AMBER: antechamber bug? produces incorrect NEWPDB.PDB file Robert Hanson (Tue Oct 28 2008 - 13:21:59 CDT)
- AMBER: Problem installing PMEMD with intel mpi, ifort Rupesh Nanjunda (Tue Oct 28 2008 - 16:07:01 CDT)
- Re: AMBER: antechamber bug? produces incorrect NEWPDB.PDB file David A. Case (Tue Oct 28 2008 - 17:09:38 CDT)
- Re: AMBER: SPCFW problems David A. Case (Tue Oct 28 2008 - 17:12:02 CDT)
- Re: AMBER: Identification of improper torsions in small molecules parameterized with GAFF by antechamber David A. Case (Tue Oct 28 2008 - 17:15:11 CDT)
- Re: AMBER: antechamber bug? produces incorrect NEWPDB.PDB file Robert Hanson (Tue Oct 28 2008 - 17:42:19 CDT)
- RE: AMBER: Problem installing PMEMD with intel mpi, ifort Ross Walker (Tue Oct 28 2008 - 19:41:39 CDT)
- Re: AMBER: Problem installing PMEMD with intel mpi, ifort Robert Duke (Tue Oct 28 2008 - 20:12:17 CDT)
- Re: AMBER: antechamber bug? produces incorrect NEWPDB.PDB file FyD (Wed Oct 29 2008 - 02:19:41 CDT)
- AMBER: ANAL Madhumalar Arumugam (Wed Oct 29 2008 - 03:44:57 CDT)
- AMBER: problem with Dihedral angle potentials aneesh cna (Wed Oct 29 2008 - 04:23:57 CDT)
- Re: AMBER: problem with Dihedral angle potentials Carlos Simmerling (Wed Oct 29 2008 - 05:09:15 CDT)
- Re: AMBER: antechamber bug? produces incorrect NEWPDB.PDB file David A. Case (Wed Oct 29 2008 - 05:49:06 CDT)
- Re: AMBER: antechamber bug? produces incorrect NEWPDB.PDB file Robert Hanson (Wed Oct 29 2008 - 06:50:35 CDT)
- AMBER: Huge difference between pbtot and gbtot in mm-pbsa calculations moitrayee_at_mbu.iisc.ernet.in (Wed Oct 29 2008 - 08:07:23 CDT)
- RE: AMBER: Huge difference between pbtot and gbtot in mm-pbsa calculations Ray Luo (Wed Oct 29 2008 - 11:41:38 CDT)
- AMBER: Folate parameters Michael Lerner (Wed Oct 29 2008 - 12:03:06 CDT)
- Re: AMBER: Problem installing PMEMD with intel mpi, ifort Rupesh Nanjunda (Wed Oct 29 2008 - 12:57:06 CDT)
- AMBER: Optimal compiling of amber on XT3 Patrick McCarren (Wed Oct 29 2008 - 23:30:56 CDT)
- Re: AMBER: Optimal compiling of amber on XT3 Robert Duke (Thu Oct 30 2008 - 00:31:49 CDT)
- RE: AMBER: Optimal compiling of amber on XT3 Ross Walker (Thu Oct 30 2008 - 00:33:35 CDT)
- Re: AMBER: Optimal compiling of amber on XT3 Robert Duke (Thu Oct 30 2008 - 00:59:21 CDT)
- RE: AMBER: Huge difference between pbtot and gbtot in mm-pbsa calculations moitrayee_at_mbu.iisc.ernet.in (Thu Oct 30 2008 - 00:56:51 CDT)
- Re: AMBER: problem with Dihedral angle potentials aneesh cna (Thu Oct 30 2008 - 04:11:48 CDT)
- Re: AMBER: problem with Dihedral angle potentials Carlos Simmerling (Thu Oct 30 2008 - 05:20:59 CDT)
- Re: AMBER: Optimal compiling of amber on XT3 Carlos Simmerling (Thu Oct 30 2008 - 05:22:35 CDT)
- AMBER: Packing density calculation Siddharth Rastogi (Thu Oct 30 2008 - 05:41:58 CDT)
- Re: AMBER: Huge difference between pbtot and gbtot in mm-pbsa calculations David A. Case (Thu Oct 30 2008 - 06:24:12 CDT)
- Re: AMBER: Huge difference between pbtot and gbtot in mm-pbsa calculations moitrayee_at_mbu.iisc.ernet.in (Thu Oct 30 2008 - 07:49:44 CDT)
- Re: AMBER: Huge difference between pbtot and gbtot in mm-pbsa calculations David A. Case (Thu Oct 30 2008 - 08:17:12 CDT)
- AMBER: Lone pairs in antechamber Diddo Diddens (Thu Oct 30 2008 - 08:25:35 CDT)
- Re: AMBER: Folate parameters Barbault Florent (Thu Oct 30 2008 - 09:03:09 CDT)
- Re: AMBER: Lone pairs in antechamber David A. Case (Thu Oct 30 2008 - 09:27:31 CDT)
- Re: AMBER: Problem installing PMEMD with intel mpi, ifort Rupesh Nanjunda (Thu Oct 30 2008 - 10:07:56 CDT)
- Re: AMBER: problem with Dihedral angle potentials aneesh cna (Thu Oct 30 2008 - 11:35:00 CDT)
- AMBER: minimization Jacopo Sgrignani (Thu Oct 30 2008 - 13:03:29 CDT)
- RE: AMBER: minimization Ross Walker (Thu Oct 30 2008 - 13:48:11 CDT)
- AMBER: MM_PBSA binding error Larry Layne (Thu Oct 30 2008 - 13:54:24 CDT)
- AMBER: Setting GROUP for pmemd Francesco Pietra (Thu Oct 30 2008 - 14:10:39 CDT)
- Re: AMBER: Setting GROUP for pmemd Robert Duke (Thu Oct 30 2008 - 14:29:27 CDT)
- RE: AMBER: MM_PBSA binding error Ray Luo (Thu Oct 30 2008 - 14:35:36 CDT)
- Re: AMBER: Setting GROUP for pmemd Francesco Pietra (Thu Oct 30 2008 - 16:56:27 CDT)
- Re: AMBER: problem with Dihedral angle potentials Carlos Simmerling (Thu Oct 30 2008 - 17:07:27 CDT)
- Re: AMBER: Setting GROUP for pmemd Robert Duke (Thu Oct 30 2008 - 17:30:07 CDT)
- Re: AMBER: Setting GROUP for pmemd Francesco Pietra (Thu Oct 30 2008 - 18:28:37 CDT)
- AMBER: Query on restart file Neha Gandhi (Thu Oct 30 2008 - 20:49:30 CDT)
- Re: AMBER: Setting GROUP for pmemd Robert Duke (Thu Oct 30 2008 - 21:02:05 CDT)
- Re: AMBER: Query on restart file Carlos Simmerling (Thu Oct 30 2008 - 21:03:53 CDT)
- Re: AMBER: Query on restart file Robert Duke (Thu Oct 30 2008 - 21:14:40 CDT)
- Re: AMBER: Query on restart file Neha Gandhi (Thu Oct 30 2008 - 21:22:49 CDT)
- AMBER: error message of xleap Catein Catherine (Thu Oct 30 2008 - 22:40:49 CDT)
- RE: AMBER: error message of xleap Ross Walker (Thu Oct 30 2008 - 23:09:47 CDT)
- AMBER: how to ger resp charge for a residue? WJ Ding (Thu Oct 30 2008 - 23:20:05 CDT)
- AMBER: problem with zMatrix in tleap WJ Ding (Thu Oct 30 2008 - 23:40:59 CDT)
- RE: AMBER: how to ger resp charge for a residue? Ross Walker (Thu Oct 30 2008 - 23:46:43 CDT)
- Re: AMBER: Setting GROUP for pmemd Francesco Pietra (Fri Oct 31 2008 - 01:25:44 CDT)
- Re: AMBER: how to ger resp charge for a residue? FyD (Fri Oct 31 2008 - 01:33:42 CDT)
- Re: AMBER: how to ger resp charge for a residue? Francesco Pietra (Fri Oct 31 2008 - 02:59:31 CDT)
- AMBER: minimization Jacopo Sgrignani (Fri Oct 31 2008 - 03:52:12 CDT)
- Re: AMBER: problem with zMatrix in tleap David A. Case (Fri Oct 31 2008 - 07:33:44 CDT)
- RE: AMBER: MM_PBSA binding error Larry Layne (Fri Oct 31 2008 - 07:56:42 CDT)
- Re: AMBER: how to ger resp charge for a residue? FyD (Fri Oct 31 2008 - 08:21:13 CDT)
- Re: AMBER: problem with zMatrix in tleap WJ Ding (Fri Oct 31 2008 - 09:23:45 CDT)
- Re: AMBER: how to ger resp charge for a residue? WJ Ding (Fri Oct 31 2008 - 09:26:48 CDT)
- Re: AMBER: problem with zMatrix in tleap David A. Case (Fri Oct 31 2008 - 09:37:11 CDT)
- RE: AMBER: minimization Ross Walker (Fri Oct 31 2008 - 10:44:49 CDT)
- Re: AMBER: problem with zMatrix in tleap WJ Ding (Fri Oct 31 2008 - 10:48:27 CDT)
- AMBER: Question on AMBER MD Implications Campbell, Patrick (Fri Oct 31 2008 - 11:27:41 CDT)
- Re: AMBER: Question on AMBER MD Implications Carlos Simmerling (Fri Oct 31 2008 - 11:51:21 CDT)
- AMBER: Trouble compiling Amber 9 leap programs on SGI Altix system John Finke (Fri Oct 31 2008 - 13:05:57 CDT)
- RE: AMBER: Trouble compiling Amber 9 leap programs on SGI Altix system Ross Walker (Fri Oct 31 2008 - 13:22:13 CDT)
- Re: AMBER: drug/protein interaction modeling setup Sean Johnston (Fri Oct 31 2008 - 14:31:56 CDT)
- Re: AMBER: MM_PBSA binding error Ray Luo (Fri Oct 31 2008 - 17:16:41 CDT)
- AMBER: MM-PBSA error in Amber10: possible bug? Pablo Englebienne (Fri Oct 31 2008 - 22:38:15 CDT)
Last message date: Wed Dec 31 2008 - 22:47:27 CST
Archived on: Thu Jan 08 2009 - 16:01:49 CST
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