AMBER Archive (2008)

Subject: Re: AMBER: changing pdb structure

From: Sally Pias (sallypias_at_gmail.com)
Date: Sun Oct 12 2008 - 00:00:38 CDT

Taufik,

DeepView (Swiss PDB Viewer) can easily incorporate point mutations to
standard amino acids.

Sally

On Thu, Oct 9, 2008 at 8:35 PM, <taufik.alsarraj_at_utoronto.ca> wrote:
> Hello,
> This is a general question.
>
> If i take a structure from the protein data bank, and the structure contains
> a protein and a DNA, is there a a software or a relatively simple method for
> modifying the protein sequence or the DNA sequence, e.g. changing an A to L
> (Protein) or changing a T to A (DNA). Short of manual modification in xleap
> or deleting the original DNA and creating a new one.
>
>
> Best,
> Taufik
>
>
>
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