AMBER Archive (2008)

Subject: Re: Re: AMBER: Installation Error

From: Ye Mei (ymei_at_itcc.nju.edu.cn)
Date: Wed Oct 15 2008 - 03:54:57 CDT

amber 9 has its own bugfix. You may check the amber website.
กกกก

======== 2008-10-15 16:52:21 Jagan Mohan wrote========

Thanks a lot scott... It worked... Do AMBER 10 bug fixes be applied to AMBER 9 as well... this is a 10 bug fix but it did help me in installing the v9... so is it the same case with all fixes...


On Wed, Oct 15, 2008 at 1:35 PM, Scott Brozell <sbrozell_at_scripps.edu> wrote:

Hi,

http://ambermd.org/bugfixes/10.0/bugfix.2

Scott


On Wed, 15 Oct 2008, Jagan Mohan wrote:

> Hello everybody,
> Please help me out to debug this error which appeared while installing
> amber9.
>
> gfortran -o ambpdb ambpdb.o forFIRSTtype.o forFIRSTbond.o forFIRSThbond.o
> forFIRSTteth.o forFIRSToutp.o ../lib/amopen.o ../lib/mexit.o
> ../lib/nxtsec.o
> cpp -traditional -P -xassembler-with-cpp -Dsecond=ambsecond nucgen.f >
> _nucgen.f
> gfortran -c -O0 -fno-second-underscore -march=nocona -o nucgen.o
> _nucgen.f
> cpp -traditional -P -xassembler-with-cpp -Dsecond=ambsecond ngfil.f >
> _ngfil.f
> gfortran -c -O0 -fno-second-underscore -march=nocona -o ngfil.o _ngfil.f
> gfortran -o nucgen nucgen.o ngfil.o ../lib/amopen.o ../lib/mexit.o
> ../lib/nxtsec.o
> g++ -c -o elsize.o elsize.cc
> elsize.cc: In function 'int main(int, char**)':
> elsize.cc:117: error: 'exit' was not declared in this scope
> elsize.cc:124: error: 'strcmp' was not declared in this scope
> elsize.cc:145: error: 'strcmp' was not declared in this scope
> elsize.cc:160: error: 'calloc' was not declared in this scope
> elsize.cc:171: error: 'exit' was not declared in this scope
> elsize.cc:233: error: 'exit' was not declared in this scope
> elsize.cc:295: error: 'exit' was not declared in this scope
> elsize.cc:339: error: 'exit' was not declared in this scope
> elsize.cc: In function 'atom_count GetNumberOfAtoms(const char*, int)':
> elsize.cc:504: error: 'exit' was not declared in this scope
> elsize.cc: In function 'atom_count ReadAtomicCoordinates(const char*, int,
> atom_count, double*, double*, double*, double*, double*)':
> elsize.cc:565: error: 'exit' was not declared in this scope
> make[1]: *** [elsize.o] Error 1
> make[1]: Leaving directory `/usr/local/amber9/src/etc'

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--
-{[O]}-


= = = = = = = = = = = = = = = = = = = = = =
Ye Mei
ymei_at_itcc.nju.edu.cn
Institute of Theoretical and Computational Chemistry
Key Laboratory of Mesoscopic Chemistry
School of Chemistry and Chemical Engineering
Nanjing University
Nanjing 210093
P.R.China
2008-10-15

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