AMBER Archive (2008)

Subject: AMBER: changing pdb structure

From: taufik.alsarraj_at_utoronto.ca
Date: Thu Oct 09 2008 - 21:35:07 CDT

Hello,
This is a general question.

If i take a structure from the protein data bank, and the structure
contains a protein and a DNA, is there a a software or a relatively
simple method for modifying the protein sequence or the DNA sequence,
e.g. changing an A to L (Protein) or changing a T to A (DNA). Short of
manual modification in xleap or deleting the original DNA and creating
a new one.

Best,
Taufik

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