AMBER Archive (2008)

Subject: Re: AMBER: Installation Error

From: Jagan Mohan (o.jagan_at_gmail.com)
Date: Wed Oct 15 2008 - 03:51:03 CDT

Thanks a lot scott... It worked... Do AMBER 10 bug fixes be applied to AMBER
9 as well... this is a 10 bug fix but it did help me in installing the v9...
so is it the same case with all fixes...

On Wed, Oct 15, 2008 at 1:35 PM, Scott Brozell <sbrozell_at_scripps.edu> wrote:

> Hi,
>
> http://ambermd.org/bugfixes/10.0/bugfix.2
>
> Scott
>
> On Wed, 15 Oct 2008, Jagan Mohan wrote:
>
> > Hello everybody,
> > Please help me out to debug this error which appeared while installing
> > amber9.
> >
> > gfortran -o ambpdb ambpdb.o forFIRSTtype.o forFIRSTbond.o
> forFIRSThbond.o
> > forFIRSTteth.o forFIRSToutp.o ../lib/amopen.o ../lib/mexit.o
> > ../lib/nxtsec.o
> > cpp -traditional -P -xassembler-with-cpp -Dsecond=ambsecond nucgen.f >
> > _nucgen.f
> > gfortran -c -O0 -fno-second-underscore -march=nocona -o nucgen.o
> > _nucgen.f
> > cpp -traditional -P -xassembler-with-cpp -Dsecond=ambsecond ngfil.f >
> > _ngfil.f
> > gfortran -c -O0 -fno-second-underscore -march=nocona -o ngfil.o
> _ngfil.f
> > gfortran -o nucgen nucgen.o ngfil.o ../lib/amopen.o ../lib/mexit.o
> > ../lib/nxtsec.o
> > g++ -c -o elsize.o elsize.cc
> > elsize.cc: In function 'int main(int, char**)':
> > elsize.cc:117: error: 'exit' was not declared in this scope
> > elsize.cc:124: error: 'strcmp' was not declared in this scope
> > elsize.cc:145: error: 'strcmp' was not declared in this scope
> > elsize.cc:160: error: 'calloc' was not declared in this scope
> > elsize.cc:171: error: 'exit' was not declared in this scope
> > elsize.cc:233: error: 'exit' was not declared in this scope
> > elsize.cc:295: error: 'exit' was not declared in this scope
> > elsize.cc:339: error: 'exit' was not declared in this scope
> > elsize.cc: In function 'atom_count GetNumberOfAtoms(const char*, int)':
> > elsize.cc:504: error: 'exit' was not declared in this scope
> > elsize.cc: In function 'atom_count ReadAtomicCoordinates(const char*,
> int,
> > atom_count, double*, double*, double*, double*, double*)':
> > elsize.cc:565: error: 'exit' was not declared in this scope
> > make[1]: *** [elsize.o] Error 1
> > make[1]: Leaving directory `/usr/local/amber9/src/etc'
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