AMBER Archive (2008)

Subject: Re: AMBER: Jmol 11.7.1 pre-release version reads AMBER trajectory/coordinate files

From: FyD (fyd_at_q4md-forcefieldtools.org)
Date: Wed Oct 08 2008 - 14:00:33 CDT

Quoting Robert Hanson <hansonr_at_stolaf.edu>:

> Jmol/AMBER aficionados:
> The latest pre-release of Jmol, Jmol 11.7.1 (
> https://sourceforge.net/project/showfiles.php?group_id=23629) allows reading
> of AMBER topology and coordinate files.
>
> For those of you not familiar with Jmol (http://jmol.sourceforge.net,
> http://chemapps.stolaf.edu/jmol), this open source Java applet and
> application, though not as sophisticated as VMD -- and not in any way
> intended to substitute for that program -- does allow quite extensive
> molecular structure rendering capability, not just in the area of molecular
> dynamics.
>
> If you have any interest in using Jmol or helping with its development,
> please do not hesitate to contact me or, especially, to join our user group
> (see http://jmol.sourceforge.net/project/).

Very nice...

Can Jmol display force field atom types available in Tripos mol2
files, AMBER prmtop files or in CML files ? This would be great, & we
would add this new feature in R.E.DD.B...

Thank you, regards, Francois

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