AMBER Archive (2008)

Subject: RE: AMBER: Trouble compiling Amber 9 leap programs on SGI Altix system

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Fri Oct 31 2008 - 13:22:13 CDT

Hi John,

 

Pasting 'could not open source file "X11/IntrinsicP.h"' into the google
search box on http://archive.ambermd.org brings up some very useful hits.
The first one being:

 

http://archive.ambermd.org/200709/0206.html

 

Where I explain that:

 

Check that you have the X11 development libraries installed and that the
file /usr/X11R6/include/X11/IntrinsicP.h exists. On Redhat EL4 this is part
of xorg-x11-devel:
  
[07:25][xxxxxxxxxxx:0.14][xxx:~]$ rpm -qf
/usr/X11R6/include/X11/IntrinsicP.h
xorg-x11-devel-6.8.2-1.EL.19

 

All the best

Ross

 

 

From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf Of
John Finke
Sent: Friday, October 31, 2008 11:06 AM
To: amber_at_scripps.edu
Subject: AMBER: Trouble compiling Amber 9 leap programs on SGI Altix system

 

I have been having trouble compiling the leap programs.

To simplify the compiling situation, I have been attempting to compile the
leap program individually using the ifort compiler (I get the same error
when I compile the entire AMBER 9 program as well).

"cd $AMBERHOME/src/leap/src/leap"

"make clean"
 
"make"

The program compiles up to a point but the followin error occurs which kills
the compilation.

----------------------------------------------------------------------------
--------
icc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-o xTank.o xTank.c
xTank.c(62): catastrophic error: could not open source file
"X11/IntrinsicP.h" #include <X11/IntrinsicP.h>
                                    ^

compilation aborted for xTank.c (code 4)
make: *** [xTank.o] Error 4
----------------------------------------------------------------------------
---------

Any suggestions on how to locate this IntrinsicP.h file or comment out the
lines which are killing the compilation?

Thanks,

John Finke

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