AMBER Archive (2008)

Subject: Re: AMBER: amber10 installation on sgi_mips

From: Rima Chaudhuri (rima.chaudhuri_at_gmail.com)
Date: Wed Oct 01 2008 - 21:31:06 CDT

Thanks Bill.
The limits for now is:
ulimit -a
time(seconds) unlimited
file(blocks) unlimited
data(kbytes) unlimited
stack(kbytes) 65536
memory(kbytes) 33165744
coredump(blocks) unlimited
nofiles(descriptors) 200
vmemory(kbytes) unlimited
concurrency(threads) 1024

I will set the memory upper limit to unlimited and see if it works..

In the meanwhile, i tried to install the serial version using the
-nobintraj flag and I get a different error:

/usr/lib32/cmplrs/be translates /tmp/ctmB.BAAa02vkR into
_new2oldparm-after-lno.f and _new2oldparm.loc, based on source
_new2oldparm.f
/usr/lib32/cmplrs/be: FATAL ERROR: Error in buffer access: Too many
pragmas in sequence in WN2F_pragma()
f90 INTERNAL ERROR: /usr/lib32/cmplrs/be returned non-zero status 1
*** Error code 1 (bu21)
*** Error code 1 (bu21)

thanks,

On Wed, Oct 1, 2008 at 5:11 PM, Bill Ross <ross_at_cgl.ucsf.edu> wrote:
>> /lib/cpp -I/n2/rchaud/amber10/include -P -DSGI -DnoVDINVSQRT -DMPI
>> qm2_dftb_module.f > _qm2_dftb_module.f
>> /n2/rchaud/amber10/bin/mpif77 -c -n32 -mips4 -r14000 -O3
>> -LIST:notes=ON:software_names=ON
>> -LIST:all_options=ON:cite=ON:symbols=ON -freeform -o
>> qm2_dftb_module.o _qm2_dftb_module.f
>> /usr/lib32/cmplrs/be translates /tmp/ctmB.BAAa02vBo into
>> _qm2_dftb_module-after-lno.f and _qm2_dftb_module.loc, based on source
>> _qm2_dftb_module.f
>> ### Compiler Error in file _qm2_dftb_module.f during Codegen Emit phase:
>> ### Out of memory in MEM_POOL_Alloc
>> f90 INTERNAL ERROR: /usr/lib32/cmplrs/be returned non-zero status 1
>> /n2/rchaud/amber10/bin/mpif77: No such file or directory
>> *** Error code 1 (bu21)
>> *** Error code 1 (bu21)
>
> The msg about mpif77 may not matter given that the 1st error is:
>
>> ### Out of memory in MEM_POOL_Alloc
>
> For this you might try the unix 'limit' or 'ulimit -a' cmd to see what
> the limit is on memory for your shell. You may be able to lift the limit,
> 'man ulimit' for more detail.
>
> Bill
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-- 
-Rima
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