AMBER Archive (2008)

Subject: AMBER: antechamber

From: Marcela Madrid (mmadrid_at_psc.edu)
Date: Thu Oct 16 2008 - 15:37:07 CDT

hi,

I am trying to generate a new residue using antechamber. How do I
specify which are the head and tail atoms? I am having trouble with
this. I can generate a single residue, for ex. by terminating the chain
with H, but not one that is joined to other residues. I believe the
tutorials on-line use xleap for this. Is it possible to use antechamber?
  One tutorial says I will need the file mainchain.dat.
If so, what are the omit_name atoms?

thanks, Marcela
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