AMBER Archive (2008)

Subject: Re: AMBER: peptide MD

From: Carlos Simmerling (
Date: Mon Oct 27 2008 - 12:05:00 CDT

it depends a lot on whether you have a structure or not, or any constraints.

On 10/27/08, Beale, John <> wrote:
> I need to set up a system to use MD simulate the interaction of two
> decameric peptides in explicit solvent. I need some guidance. Can I use
> LEaP to set up such a system? How do I proceed?
> John

Carlos L. Simmerling, Ph.D.
Professor, Department of Chemistry
CMM Bldg, Room G80           Phone: (631) 632-1336   Fax: 632-1555
Stony Brook University           E-mail:
Stony Brook, NY 11794-5115 Web:
The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)