AMBER Archive (2008)

Subject: RE: AMBER: problem with amber8 installation

From: moitrayee_at_mbu.iisc.ernet.in
Date: Sat Oct 25 2008 - 01:36:27 CDT

Hi Ross,
Thanks a lot for your reply.
I updated my intel compilers to: Intel(R) Fortran Compiler for 32-bit
applications, Version 9.0 Build 20060222Z Package ID: l_fc_c_9.0.033

But now i am getting a new problem when i do make serial:

Starting installation of Amber8 (serial) at Sat Oct 25 11:54:36 IST 2008.
mkdir ../exe
mkdir: cannot create directory `../exe': File exists
make: [serial] Error 1 (ignored)
cd lib; make install
make[1]: Entering directory `/soft/amber8/src/lib'
cpp -traditional -P -I/soft/amber8/src/include -DMKL new2oldparm.f >
_new2oldparm.f
ifort -c -w95 -tpp7 -mp1 -O0 -o new2oldparm.o _new2oldparm.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL nxtsec.f > _nxtsec.f
ifort -c -w95 -tpp7 -mp1 -O0 -o nxtsec.o _nxtsec.f
ifort -o new2oldparm new2oldparm.o nxtsec.o
mv new2oldparm ../../exe
/bin/rm _*.f
make[1]: Leaving directory `/soft/amber8/src/lib'
cd addles; make install
make[1]: Entering directory `/soft/amber8/src/addles'
cpp -traditional -P -I/soft/amber8/src/include -DMKL lesmain.f > _lesmain.f
ifort -c -w95 -tpp7 -mp1 -O0 -o lesmain.o _lesmain.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL addspace.f > _addspace.f
ifort -c -w95 -tpp7 -mp1 -O0 -o addspace.o _addspace.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL readprm.f > _readprm.f
ifort -c -w95 -tpp7 -mp1 -O0 -o readprm.o _readprm.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL writprm.f > _writprm.f
ifort -c -w95 -tpp7 -mp1 -O0 -o writprm.o _writprm.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL readcrd.f > _readcrd.f
ifort -c -w95 -tpp7 -mp1 -O0 -o readcrd.o _readcrd.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL writcrd.f > _writcrd.f
ifort -c -w95 -tpp7 -mp1 -O0 -o writcrd.o _writcrd.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL pick.f > _pick.f
ifort -c -w95 -tpp7 -mp1 -O0 -o pick.o _pick.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL rline.f > _rline.f
ifort -c -w95 -tpp7 -mp1 -O0 -o rline.o _rline.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL nxt.f > _nxt.f
ifort -c -w95 -tpp7 -mp1 -O0 -o nxt.o _nxt.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL intgr.f > _intgr.f
ifort -c -w95 -tpp7 -mp1 -O0 -o intgr.o _intgr.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL find.f > _find.f
ifort -c -w95 -tpp7 -mp1 -O0 -o find.o _find.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL of.f > _of.f
ifort -c -w95 -tpp7 -mp1 -O0 -o of.o _of.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL geti.f > _geti.f
ifort -c -w95 -tpp7 -mp1 -O0 -o geti.o _geti.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL unit.f > _unit.f
ifort -c -w95 -tpp7 -mp1 -O0 -o unit.o _unit.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL getc.f > _getc.f
ifort -c -w95 -tpp7 -mp1 -O0 -o getc.o _getc.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL alert.f > _alert.f
ifort -c -w95 -tpp7 -mp1 -O0 -o alert.o _alert.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL echo.f > _echo.f
ifort -c -w95 -tpp7 -mp1 -O0 -o echo.o _echo.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL get4c.f > _get4c.f
ifort -c -w95 -tpp7 -mp1 -O0 -o get4c.o _get4c.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL getd.f > _getd.f
ifort -c -w95 -tpp7 -mp1 -O0 -o getd.o _getd.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL wlesprm.f > _wlesprm.f
ifort -c -w95 -tpp7 -mp1 -O0 -o wlesprm.o _wlesprm.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL lesprm.f > _lesprm.f
ifort -c -w95 -tpp7 -mp1 -O0 -o lesprm.o _lesprm.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL les2prm.f > _les2prm.f
ifort -c -w95 -tpp7 -mp1 -O0 -o les2prm.o _les2prm.f
cpp -traditional -P -I/soft/amber8/src/include -DMKL checksz.f > _checksz.f
ifort -c -w95 -tpp7 -mp1 -O0 -o checksz.o _checksz.f
cd ../lib; ./Makelist ../lib/random.o ../lib/mexit.o ../lib/nxtsec.o
/bin/sh: ./Makelist: /bin/csh: bad interpreter: No such file or directory
make[1]: *** [libobj] Error 126
make[1]: Leaving directory `/soft/amber8/src/addles'
make: *** [serial] Error 2
Please suggest what should i do to remove this error.
Thanks a lot.
Best Regards,
Moitrayee
> Hi Moitrayee,
>
> Pasting 'IPO link: can not find "("' into Google shows that this is a bug in
> the Intel compiler, likely a specific subset of 9.0 or 9.1. I suggest you go
> to the Intel site and update your compilers to the latest version.
>
> Ross
>
>> -----Original Message-----
>> From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf
>> Of moitrayee_at_mbu.iisc.ernet.in
>> Sent: Friday, October 24, 2008 5:23 AM
>> To: amber_at_scripps.edu
>> Subject: AMBER: problem with amber8 installation
>>
>> Dear all,
>>
>> I am trying to install Amber8 and facing the following error when doing
>> make
>> serial:
>> Starting installation of Amber8 (serial) at Fri Oct 24 17:41:39 IST 2008.
>> mkdir ../exe
>> mkdir: cannot create directory `../exe': File exists
>> make: [serial] Error 1 (ignored)
>> cd lib; make install
>> make[1]: Entering directory `/soft/amber8/src/lib'
>> ifort -o new2oldparm new2oldparm.o nxtsec.o
>> IPO link: can not find "("
>> ifort: error: problem during multi-file optimization compilation (code 1)
>> make[1]: *** [new2oldparm] Error 1
>> make[1]: Leaving directory `/soft/amber8/src/lib'
>> make: *** [serial] Error 2
>>
>>
>> I also have sourced ifort before installation. Please help regarding this
>> problem.
>> Thank you very much.
>>
>> Sincere Regards,
>> Moitrayee
>>
>>
>>
>>
>>
>>
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