AMBER Archive (2004) - May 2004 By DateMost recent messages
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Starting: Sat May 01 2004 - 07:26:57 CDT
Ending: Mon May 31 2004 - 23:42:39 CDT
- AMBER: problem for compiling amber7 by ifc8 scopio (Sat May 01 2004 - 07:26:57 CDT)
- Re: AMBER: problem for compiling amber7 by ifc8 Viktor Hornak (Sat May 01 2004 - 09:11:49 CDT)
- AMBER: Gibbs and solvent caps Sébastien Osborne (Sat May 01 2004 - 13:59:07 CDT)
- AMBER: ptraj: radius of gyration Sichun Yang (Sat May 01 2004 - 21:50:37 CDT)
- Re: AMBER: ptraj: radius of gyration Scott Brozell (Sun May 02 2004 - 03:09:12 CDT)
- AMBER: xleap problem hj zou (Sun May 02 2004 - 08:49:40 CDT)
- Re: AMBER: ptraj: radius of gyration Bill Ross (Sun May 02 2004 - 15:12:23 CDT)
- Re: AMBER: xleap problem David A. Case (Sun May 02 2004 - 16:07:20 CDT)
- Re: AMBER: xleap problem Oliver Hucke (Sun May 02 2004 - 17:53:42 CDT)
- Re: AMBER: problem for compiling amber7 by ifc8 scopio (Sun May 02 2004 - 19:15:58 CDT)
- AMBER: nmode analysis sebnem (Sun May 02 2004 - 19:52:12 CDT)
- Re: AMBER: problem for compiling amber7 by ifc8 scopio (Sun May 02 2004 - 23:18:31 CDT)
- Re: Re: AMBER: xleap problem hj zou (Mon May 03 2004 - 03:02:34 CDT)
- Re: AMBER: Gibbs and solvent caps Miguel de Federico (Mon May 03 2004 - 05:28:47 CDT)
- Re: AMBER: xleap problem scopio (Mon May 03 2004 - 03:51:03 CDT)
- AMBER: any program or tool Helios Chen (Mon May 03 2004 - 05:16:15 CDT)
- Re: AMBER: any program or tool Andreas Svrcek-Seiler (Mon May 03 2004 - 07:11:50 CDT)
- Re: AMBER: any program or tool Viktor Hornak (Mon May 03 2004 - 07:18:56 CDT)
- Re: Re: AMBER: xleap problem David A. Case (Mon May 03 2004 - 10:45:34 CDT)
- Re: AMBER: nmode analysis David A. Case (Mon May 03 2004 - 10:50:44 CDT)
- Re: AMBER: nmode analysis sebnem_at_mercury.chem.pitt.edu (Mon May 03 2004 - 11:31:18 CDT)
- Re: AMBER: nmode analysis David A. Case (Mon May 03 2004 - 12:14:19 CDT)
- AMBER: some bugfixes David A. Case (Mon May 03 2004 - 13:10:47 CDT)
- Re: AMBER: some bugfixes Sébastien Osborne (Mon May 03 2004 - 13:14:33 CDT)
- AMBER: resp demo files Kristy Mardis (Mon May 03 2004 - 14:29:45 CDT)
- Re: AMBER: resp demo files FyD (Mon May 03 2004 - 16:40:15 CDT)
- AMBER: why delete water molecule Helios Chen (Mon May 03 2004 - 23:18:49 CDT)
- AMBER: separate the longitudinal and transverse vibrations frequencies xiaowei li (Mon May 03 2004 - 23:33:11 CDT)
- AMBER: Troubles in the NTP simulation: "vlimit exceeded". Ülo Lille (Tue May 04 2004 - 05:16:24 CDT)
- Re: AMBER: Troubles in the NTP simulation: "vlimit exceeded". Jiten (Tue May 04 2004 - 05:58:20 CDT)
- AMBER: PMF correction factor Harvey, David Richard (Tue May 04 2004 - 08:35:13 CDT)
- AMBER: How to choose force constant? tomjas_at_poczta.onet.pl (Tue May 04 2004 - 08:48:44 CDT)
- Re: AMBER: why delete water molecule Dr. Yong Duan (Tue May 04 2004 - 09:40:57 CDT)
- Re: AMBER: Troubles in the NTP simulation: "vlimit exceeded". David A. Case (Tue May 04 2004 - 10:10:36 CDT)
- AMBER: Normal Mode Analysis possibility myang (Tue May 04 2004 - 10:52:05 CDT)
- Re: AMBER: why delete water molecule Oliver Hucke (Tue May 04 2004 - 11:23:01 CDT)
- Re: AMBER: Troubles in the NTP simulation: "vlimit exceeded". Bill Ross (Tue May 04 2004 - 11:44:16 CDT)
- AMBER: reproduction of RESP charges for Gly Mikyung Seo (Tue May 04 2004 - 12:51:01 CDT)
- AMBER: problem with MM/PBSA Itziar Maestre Asenjo (Tue May 04 2004 - 11:38:32 CDT)
- Re: AMBER: PMF correction factor David A. Case (Tue May 04 2004 - 13:01:18 CDT)
- Re: AMBER: some bugfixes Oliver Hucke (Tue May 04 2004 - 13:12:53 CDT)
- Re: AMBER: separate the longitudinal and transverse vibrations frequencies David A. Case (Tue May 04 2004 - 13:15:38 CDT)
- Re: AMBER: Normal Mode Analysis possibility David A. Case (Tue May 04 2004 - 13:25:27 CDT)
- Re: AMBER: some bugfixes Junmei Wang (Tue May 04 2004 - 14:23:55 CDT)
- Re: AMBER: reproduction of RESP charges for Gly FyD (Tue May 04 2004 - 15:16:00 CDT)
- Re: AMBER: reproduction of RESP charges for Gly Bill Ross (Tue May 04 2004 - 15:24:41 CDT)
- Re: AMBER: reproduction of RESP charges for Gly Bill Ross (Tue May 04 2004 - 15:35:49 CDT)
- Re: AMBER: reproduction of RESP charges for Gly FyD (Tue May 04 2004 - 15:48:43 CDT)
- AMBER: antechamber Guanglei Cui (Tue May 04 2004 - 21:49:28 CDT)
- Re: AMBER: xleap problem hj zou (Tue May 04 2004 - 21:44:43 CDT)
- AMBER: methane box anshul_at_imtech.res.in (Wed May 05 2004 - 13:57:16 CDT)
- AMBER: ptraj analyze matrix entropy Marcin Krol (Wed May 05 2004 - 04:19:32 CDT)
- AMBER: H Bonds anshul_at_imtech.res.in (Wed May 05 2004 - 15:07:01 CDT)
- AMBER: Implicit solvents anshul_at_imtech.res.in (Wed May 05 2004 - 15:10:20 CDT)
- Re: AMBER: problem with MM/PBSA Holger Gohlke (Wed May 05 2004 - 05:14:47 CDT)
- Re: AMBER: ptraj analyze matrix entropy Holger Gohlke (Wed May 05 2004 - 05:28:57 CDT)
- Re: AMBER: ptraj analyze matrix entropy Marcin Krol (Wed May 05 2004 - 10:07:05 CDT)
- Re: AMBER: methane box FyD (Wed May 05 2004 - 10:36:08 CDT)
- Re: AMBER: Implicit solvents David A. Case (Wed May 05 2004 - 10:54:56 CDT)
- Re: AMBER: H Bonds David A. Case (Wed May 05 2004 - 11:20:26 CDT)
- AMBER: reorientation in R.E.D Mikyung Seo (Wed May 05 2004 - 11:38:01 CDT)
- Re: AMBER: ptraj analyze matrix entropy Holger Gohlke (Wed May 05 2004 - 11:32:23 CDT)
- Re: AMBER: reorientation in R.E.D FyD (Wed May 05 2004 - 12:55:51 CDT)
- AMBER: antechamber gives GDP 0 charge Raik Grünberg (Wed May 05 2004 - 15:17:53 CDT)
- Re: AMBER: antechamber gives GDP 0 charge Oliver Hucke (Wed May 05 2004 - 15:46:06 CDT)
- Re: AMBER: antechamber Amber admin (Wed May 05 2004 - 15:51:22 CDT)
- Re: AMBER: H Bonds Bill Ross (Wed May 05 2004 - 16:18:22 CDT)
- Re: AMBER: antechamber Scott Brozell (Wed May 05 2004 - 16:30:17 CDT)
- AMBER: Solvent accessible surface area(LCPO) computation Sunil_Koovakkat_at_berlex.com (Wed May 05 2004 - 16:51:59 CDT)
- Re: AMBER: How to choose force constant? David A. Case (Wed May 05 2004 - 17:00:14 CDT)
- AMBER: Sander klambda question Linda Prengaman (Wed May 05 2004 - 17:14:22 CDT)
- Re: AMBER: Sander klambda question David A. Case (Wed May 05 2004 - 18:43:44 CDT)
- Re: AMBER: H Bonds Sanjeev B.S. (Thu May 06 2004 - 00:09:06 CDT)
- AMBER: simulated anealing ...vlimit exceed anshul_at_imtech.res.in (Thu May 06 2004 - 16:50:35 CDT)
- Re: AMBER: simulated anealing ...vlimit exceed Carlos Simmerling (Thu May 06 2004 - 06:47:48 CDT)
- Re: AMBER: H Bonds anshul_at_imtech.res.in (Thu May 06 2004 - 17:51:32 CDT)
- Re: AMBER: H Bonds anshul_at_imtech.res.in (Thu May 06 2004 - 18:01:33 CDT)
- Re: AMBER: simulated anealing ...vlimit exceed anshul_at_imtech.res.in (Thu May 06 2004 - 18:14:53 CDT)
- Re: AMBER: simulated anealing ...vlimit exceed Carlos Simmerling (Thu May 06 2004 - 08:24:02 CDT)
- Re: AMBER: ptraj analyze matrix entropy Marcin Krol (Thu May 06 2004 - 08:48:02 CDT)
- AMBER: Possible amber8 antechamber PDB parsing bug Mark Williamson (Thu May 06 2004 - 10:16:19 CDT)
- Re: AMBER: ptraj analyze matrix entropy David A. Case (Thu May 06 2004 - 10:29:30 CDT)
- AMBER: ions in mm_pbsa Fang, Jianwen (Thu May 06 2004 - 10:30:12 CDT)
- AMBER: Ligand from CCDC. Osman Gani (Thu May 06 2004 - 10:38:16 CDT)
- AMBER: Possible amber8 antechamber PDB parsing bug Junmei Wang (Thu May 06 2004 - 12:09:30 CDT)
- FW: AMBER: ions in mm_pbsa S. Frank Yan (Thu May 06 2004 - 12:23:55 CDT)
- Re: AMBER: H Bonds Bill Ross (Thu May 06 2004 - 13:16:11 CDT)
- AMBER: Computing psec/day using Amber 8 Craig TOEPFER (Thu May 06 2004 - 13:21:53 CDT)
- AMBER: Opteron PMEMD Gary Waters (Thu May 06 2004 - 13:29:56 CDT)
- Re: AMBER: Computing psec/day using Amber 8 David A. Case (Thu May 06 2004 - 13:42:37 CDT)
- Re: AMBER: ions in mm_pbsa Thomas E. Cheatham, III (Thu May 06 2004 - 14:07:42 CDT)
- Re: AMBER: Computing psec/day using Amber 8 Craig TOEPFER (Thu May 06 2004 - 14:19:01 CDT)
- Re: AMBER: Computing psec/day using Amber 8 David A. Case (Thu May 06 2004 - 14:27:10 CDT)
- AMBER: reference with ptraj John (Thu May 06 2004 - 14:50:48 CDT)
- Re: AMBER: reference with ptraj Thomas E. Cheatham, III (Thu May 06 2004 - 15:11:58 CDT)
- Re: AMBER: Opteron PMEMD Robert Duke (Thu May 06 2004 - 15:31:46 CDT)
- AMBER: cap waters always flexible? Oliver Hucke (Thu May 06 2004 - 15:41:19 CDT)
- AMBER: choosing 3 atoms for reorientaion in R.E.D Mikyung Seo (Thu May 06 2004 - 16:38:19 CDT)
- Re: AMBER: choosing 3 atoms for reorientaion in R.E.D FyD (Thu May 06 2004 - 17:00:44 CDT)
- Re: AMBER: reference with ptraj Bill Ross (Thu May 06 2004 - 17:05:55 CDT)
- Re: AMBER: Opteron PMEMD David A. Case (Thu May 06 2004 - 17:09:47 CDT)
- Re: AMBER: reference with ptraj Thomas E. Cheatham, III (Thu May 06 2004 - 17:12:18 CDT)
- AMBER: solvent cap and eedmeth Oliver Hucke (Thu May 06 2004 - 18:31:42 CDT)
- AMBER: ntwprt feature in AMBER7 Dave S Walker (Thu May 06 2004 - 21:26:51 CDT)
- Re: AMBER: reference with ptraj Fernandez-Carmona Juan (Fri May 07 2004 - 01:27:53 CDT)
- AMBER: ptraj analyze matrix entropy Marcin Krol (Fri May 07 2004 - 03:01:23 CDT)
- Re: AMBER: H Bonds Sanjeev B.S. (Fri May 07 2004 - 03:38:24 CDT)
- Re: AMBER: ptraj analyze matrix entropy Holger Gohlke (Fri May 07 2004 - 07:48:51 CDT)
- Re: AMBER: solvent cap and eedmeth David A. Case (Fri May 07 2004 - 10:20:18 CDT)
- Re: AMBER: Solvent accessible surface area(LCPO) computation David A. Case (Fri May 07 2004 - 10:23:33 CDT)
- AMBER: hbond in ptraj Qiang Lu (Fri May 07 2004 - 13:43:33 CDT)
- Re: AMBER: hbond in ptraj Thomas E. Cheatham, III (Fri May 07 2004 - 14:15:15 CDT)
- Re: AMBER: xleap don't recognize formaldehyde? anshul_at_imtech.res.in (Sat May 08 2004 - 14:44:33 CDT)
- AMBER: Charges and atom type anshul_at_imtech.res.in (Sat May 08 2004 - 16:06:25 CDT)
- AMBER: what is its file format ? scopio (Sat May 08 2004 - 09:13:21 CDT)
- AMBER: ligand minimization atobak_at_eden.rutgers.edu (Sat May 08 2004 - 16:13:21 CDT)
- AMBER: MD with NTR + NMROPT Martin Fabani (Mon May 10 2004 - 03:56:28 CDT)
- AMBER: HIS protonation Stefano.Pieraccini_at_unimi.it (Mon May 10 2004 - 04:50:40 CDT)
- Re: AMBER: HIS protonation scopio (Mon May 10 2004 - 06:00:19 CDT)
- AMBER: ptraj read in matrix Marcin Krol (Mon May 10 2004 - 06:57:25 CDT)
- AMBER: Carnal question opitz_at_che.udel.edu (Mon May 10 2004 - 10:08:18 CDT)
- Re: AMBER: MD with NTR + NMROPT David A. Case (Mon May 10 2004 - 10:46:06 CDT)
- AMBER: A parm file suit for half beta and half alpha structure Qiang Lu (Mon May 10 2004 - 13:51:57 CDT)
- Re: AMBER: some bugfixes David A. Case (Mon May 10 2004 - 18:10:08 CDT)
- AMBER: question about mm-pbsa aini_at_UMDNJ.EDU (Mon May 10 2004 - 19:10:05 CDT)
- AMBER: what does EAMBER stand for? scopio (Mon May 10 2004 - 20:08:35 CDT)
- Re: AMBER: question about mm-pbsa Thomas Steinbrecher (Mon May 10 2004 - 20:10:09 CDT)
- AMBER: simulated anealing ...vlimit exceed Michele Porro (Tue May 11 2004 - 02:24:56 CDT)
- AMBER: mm-pbsa:- atom charges and radii ? Jeffrey Dyason (Tue May 11 2004 - 03:07:12 CDT)
- AMBER: gaussian03 output in antechamber Stefano.Pieraccini_at_unimi.it (Tue May 11 2004 - 04:27:46 CDT)
- Re: AMBER: mm-pbsa:- atom charges and radii ? Thomas E. Cheatham, III (Tue May 11 2004 - 09:24:17 CDT)
- Re: AMBER: ptraj read in matrix Holger Gohlke (Tue May 11 2004 - 09:45:11 CDT)
- AMBER: PMEMD Built ? Wont run.. Gary Waters (Tue May 11 2004 - 11:00:33 CDT)
- Re: AMBER: PMEMD Built ? Wont run.. david.evans_at_ulsop.ac.uk (Tue May 11 2004 - 11:32:18 CDT)
- Re: AMBER: PMEMD Built ? Wont run.. Gary Waters (Tue May 11 2004 - 11:55:14 CDT)
- Re: AMBER: PMEMD Built ? Wont run.. Amber admin (Tue May 11 2004 - 12:25:03 CDT)
- Re: AMBER: what does EAMBER stand for? David A. Case (Tue May 11 2004 - 12:30:56 CDT)
- Re: AMBER: PMEMD Built ? Wont run.. Gary Waters (Tue May 11 2004 - 12:36:16 CDT)
- Re: AMBER: what does EAMBER stand for? Scott Brozell (Tue May 11 2004 - 12:45:09 CDT)
- Re: AMBER: mm-pbsa:- atom charges and radii ? Ray Luo (Tue May 11 2004 - 01:21:06 CDT)
- Re: AMBER: PMEMD Built ? Wont run.. Scott Brozell (Tue May 11 2004 - 14:41:15 CDT)
- Re: AMBER: PMEMD Built ? Wont run.. Gary Waters (Tue May 11 2004 - 15:08:49 CDT)
- AMBER: ptraj and LES Guanglei Cui (Tue May 11 2004 - 16:00:12 CDT)
- Re: AMBER: PMEMD Built ? Wont run.. Amber Administration (Tue May 11 2004 - 16:15:14 CDT)
- AMBER: AMBER charges(Cornell et al JACS, 1995) and R.E.D Mikyung Seo (Tue May 11 2004 - 17:51:01 CDT)
- AMBER: dummy atom other than H Carsten Detering (Tue May 11 2004 - 20:12:22 CDT)
- AMBER: Problem : antechamber produces no output Marc Perea (Tue May 11 2004 - 05:19:52 CDT)
- Re: AMBER: MD with NTR + NMROPT anshul_at_imtech.res.in (Wed May 12 2004 - 10:07:49 CDT)
- Re: AMBER: mm-pbsa:- atom charges and radii ? Holger Gohlke (Wed May 12 2004 - 01:40:52 CDT)
- AMBER: gaussian03 output in antechamber Stefano.Pieraccini_at_unimi.it (Wed May 12 2004 - 03:46:17 CDT)
- AMBER: shake option in sander Lishan Yao (Wed May 12 2004 - 08:32:48 CDT)
- AMBER: dihedral driver Beale, John (Wed May 12 2004 - 08:58:35 CDT)
- Re: AMBER: Problem : antechamber produces no output Junmei Wang (Wed May 12 2004 - 09:40:00 CDT)
- Re: AMBER: ptraj and LES David A. Case (Wed May 12 2004 - 10:19:00 CDT)
- Re: AMBER: AMBER charges(Cornell et al JACS, 1995) and R.E.D FyD (Wed May 12 2004 - 11:42:31 CDT)
- RE: AMBER: AMBER charges(Cornell et al JACS, 1995) and R.E.D FyD (Wed May 12 2004 - 13:01:31 CDT)
- Re: AMBER: AMBER charges(Cornell et al JACS, 1995) and R.E.D Piotr Cieplak (Wed May 12 2004 - 13:57:20 CDT)
- Re: AMBER: MD with NTR + NMROPT David A. Case (Wed May 12 2004 - 14:09:24 CDT)
- Re: AMBER: shake option in sander David A. Case (Wed May 12 2004 - 14:11:53 CDT)
- AMBER: performance of periodic vs. non-periodic simulation Oliver Hucke (Wed May 12 2004 - 14:08:18 CDT)
- Re: AMBER: dummy atom other than H David A. Case (Wed May 12 2004 - 14:30:26 CDT)
- Re: AMBER: ptraj and LES Guanglei Cui (Wed May 12 2004 - 14:34:31 CDT)
- Re: AMBER: performance of periodic vs. non-periodic simulation Thomas E. Cheatham, III (Wed May 12 2004 - 15:17:33 CDT)
- Re: AMBER: performance of periodic vs. non-periodic simulation Oliver Hucke (Wed May 12 2004 - 15:42:50 CDT)
- Re: AMBER: dummy atom other than H Carsten Detering (Wed May 12 2004 - 16:18:23 CDT)
- AMBER: tmd questions hj zou (Wed May 12 2004 - 21:07:36 CDT)
- Re: AMBER: performance of periodic vs. non-periodic simulation Ben Cossins (Thu May 13 2004 - 04:22:21 CDT)
- Re: AMBER: tmd questions Carlos Simmerling (Thu May 13 2004 - 06:41:31 CDT)
- Re: AMBER: tmd questions Viktor Hornak (Thu May 13 2004 - 07:16:36 CDT)
- AMBER: Atom type with/without POL Jiten (Thu May 13 2004 - 09:01:38 CDT)
- Re: AMBER: performance of periodic vs. non-periodic simulation Oliver Hucke (Thu May 13 2004 - 11:14:08 CDT)
- AMBER: antechamber/Mopac: strange GTP charges Raik Grünberg (Thu May 13 2004 - 12:57:06 CDT)
- Re: AMBER: antechamber/Mopac: strange GTP charges carlsonh_at_umich.edu (Thu May 13 2004 - 13:40:03 CDT)
- Re: AMBER: antechamber/Mopac: strange GTP charges David A. Case (Thu May 13 2004 - 13:41:18 CDT)
- AMBER: sander_classic for cap simulations? Oliver Hucke (Thu May 13 2004 - 17:43:36 CDT)
- AMBER: Decomposition in MMPBSA Thomas Steinbrecher (Thu May 13 2004 - 19:15:03 CDT)
- Re: AMBER: mm_pbsa examples; delphi in mm_pbsa Kazuo Koyano (Fri May 14 2004 - 04:35:36 CDT)
- AMBER: FAD cofactor. Osman Gani (Fri May 14 2004 - 04:34:28 CDT)
- Re: AMBER: antechamber/Mopac: strange GTP charges Raik Grünberg (Fri May 14 2004 - 05:35:13 CDT)
- AMBER: Converting ORAC's topology file to AMBER's prepi file scopio (Fri May 14 2004 - 07:30:32 CDT)
- AMBER: Simulated annealing ...vlimit problem Venkata S Koppuravuri (Fri May 14 2004 - 09:22:44 CDT)
- AMBER: time-averaged restraints John (Fri May 14 2004 - 12:04:49 CDT)
- AMBER: questions on mm_pbsa Fang, Jianwen (Fri May 14 2004 - 13:49:54 CDT)
- Re: AMBER: antechamber/Mopac: strange GTP charges David A. Case (Fri May 14 2004 - 14:20:24 CDT)
- AMBER: solvents reference. Herbert Georg (Fri May 14 2004 - 14:56:38 CDT)
- Re: AMBER: solvents reference. David A. Case (Fri May 14 2004 - 15:16:06 CDT)
- AMBER: antechamber anshul_at_imtech.res.in (Sat May 15 2004 - 11:43:48 CDT)
- AMBER: install RESP Gustavo Pierdominici Sottile (Sat May 15 2004 - 06:54:41 CDT)
- AMBER: installing RESP Gustavo Pierdominici Sottile (Sat May 15 2004 - 06:52:59 CDT)
- Re: AMBER: antechamber David A. Case (Sat May 15 2004 - 11:02:30 CDT)
- Re: AMBER: install RESP David A. Case (Sat May 15 2004 - 11:03:57 CDT)
- Re: AMBER: Simulated annealing ...vlimit problem David A. Case (Sat May 15 2004 - 11:14:06 CDT)
- AMBER: Program error in testing of Amber8 Do Anh Tuan (Sat May 15 2004 - 23:16:44 CDT)
- AMBER: energy conservation with GB !! Pradipta Bandyopadhyay (Sun May 16 2004 - 01:27:01 CDT)
- Re: AMBER: energy conservation with GB !! Dr. Yong Duan (Sun May 16 2004 - 01:58:25 CDT)
- Re: AMBER: Simulated annealing ...vlimit problem anshul_at_imtech.res.in (Sun May 16 2004 - 15:01:55 CDT)
- Re: AMBER: Program error in testing of Amber8 Scott Brozell (Sun May 16 2004 - 18:17:44 CDT)
- AMBER: parametrizacion partial charges Gustavo Pierdominici Sottile (Mon May 17 2004 - 08:45:58 CDT)
- AMBER: why EGB = nan Fang, Jianwen (Mon May 17 2004 - 09:54:44 CDT)
- Re: AMBER: parametrizacion partial charges FyD (Mon May 17 2004 - 10:37:02 CDT)
- Re: AMBER: antechamber/Mopac: strange GTP charges Raik Grünberg (Mon May 17 2004 - 10:38:17 CDT)
- Re: AMBER: Simulated annealing ...vlimit problem Venkata S Koppuravuri (Mon May 17 2004 - 12:00:44 CDT)
- Re: AMBER: Simulated annealing ...vlimit problem Carlos Simmerling (Mon May 17 2004 - 12:08:56 CDT)
- Re: AMBER: ptraj analyze matrix entropy Holger Gohlke (Mon May 17 2004 - 13:05:57 CDT)
- AMBER: Gustavo Pierdominici Sottile (Mon May 17 2004 - 13:38:53 CDT)
- AMBER: Treating atom type LP the same as EP Sarah Wittkopp (Mon May 17 2004 - 14:16:20 CDT)
- Re: AMBER: Simulated annealing ...vlimit problem David A. Case (Mon May 17 2004 - 14:27:30 CDT)
- Re: AMBER: antechamber/Mopac: strange GTP charges David A. Case (Mon May 17 2004 - 14:31:38 CDT)
- Re: AMBER: ptraj analyze matrix entropy David A. Case (Mon May 17 2004 - 14:36:41 CDT)
- Re: AMBER: sander_classic for cap simulations? David A. Case (Mon May 17 2004 - 15:18:41 CDT)
- AMBER: thermodynamic integration of ring opening Carsten Detering (Mon May 17 2004 - 15:37:42 CDT)
- Re: AMBER: thermodynamic integration of ring opening Bill Ross (Mon May 17 2004 - 17:47:24 CDT)
- Re: AMBER: thermodynamic integration of ring opening David A. Case (Mon May 17 2004 - 18:21:15 CDT)
- Re: AMBER: thermodynamic integration of ring opening Bill Ross (Mon May 17 2004 - 18:42:25 CDT)
- Re: AMBER: thermodynamic integration of ring opening M. L. Dodson (Mon May 17 2004 - 18:46:29 CDT)
- Re: AMBER: thermodynamic integration of ring opening Bill Ross (Mon May 17 2004 - 19:10:36 CDT)
- Re: AMBER: Simulated annealing ...vlimit problem Narang Manpreet Kaur (Tue May 18 2004 - 09:09:31 CDT)
- AMBER: single amino acid energy Helios Chen (Tue May 18 2004 - 03:15:02 CDT)
- AMBER: PCA prep file Majid moghaddam (Tue May 18 2004 - 03:19:26 CDT)
- AMBER: CAP PROTOCOL SIMULATION Obdulia Rabal (Tue May 18 2004 - 04:32:29 CDT)
- AMBER: Clean in RESP Gustavo Pierdominici Sottile (Tue May 18 2004 - 06:46:38 CDT)
- AMBER: DEBUG and GB Jones, Garth A (Tue May 18 2004 - 07:02:32 CDT)
- Re: AMBER: CAP PROTOCOL SIMULATION Andreas Svrcek-Seiler (Tue May 18 2004 - 07:13:56 CDT)
- Re: AMBER: thermodynamic integration of ring opening M. L. Dodson (Tue May 18 2004 - 07:33:28 CDT)
- AMBER: NTT=4 Joachim Reichelt (Tue May 18 2004 - 09:30:33 CDT)
- Re: AMBER: Clean in RESP David A. Case (Tue May 18 2004 - 09:55:42 CDT)
- Re: AMBER: NTT=4 David A. Case (Tue May 18 2004 - 09:57:19 CDT)
- Re: AMBER: questions on mm_pbsa Holger Gohlke (Tue May 18 2004 - 10:18:24 CDT)
- Re: AMBER: single amino acid energy Holger Gohlke (Tue May 18 2004 - 10:23:26 CDT)
- AMBER: CG maxitn exceeded Obdulia Rabal (Tue May 18 2004 - 11:29:53 CDT)
- Re: AMBER: NTT=4 Joachim Reichelt (Tue May 18 2004 - 12:01:50 CDT)
- AMBER: IGR1/grnam1 problem Marcin Krol (Tue May 18 2004 - 12:40:58 CDT)
- Re: AMBER: CG maxitn exceeded Ray Luo (Mon May 17 2004 - 14:10:29 CDT)
- Re: AMBER: thermodynamic integration of ring opening Bill Ross (Tue May 18 2004 - 14:08:13 CDT)
- Re: AMBER: CAP PROTOCOL SIMULATION Ray Luo (Mon May 17 2004 - 16:43:55 CDT)
- AMBER: PB bomb in pb_saarc S. Frank Yan (Tue May 18 2004 - 15:41:41 CDT)
- Re: AMBER: CAP PROTOCOL SIMULATION Oliver Hucke (Tue May 18 2004 - 16:07:45 CDT)
- AMBER: average structure from traj Holly Freedman (Tue May 18 2004 - 16:30:07 CDT)
- Re: AMBER: PB bomb in pb_saarc Ray Luo (Mon May 17 2004 - 17:58:21 CDT)
- Re: AMBER: CAP PROTOCOL SIMULATION Ray Luo (Mon May 17 2004 - 18:07:17 CDT)
- Re: AMBER: CAP PROTOCOL SIMULATION David A. Case (Tue May 18 2004 - 17:47:26 CDT)
- RE: AMBER: PB bomb in pb_saarc S. Frank Yan (Tue May 18 2004 - 18:14:36 CDT)
- AMBER: Removal of rotation: Flying ice cube koby levy (Tue May 18 2004 - 19:23:54 CDT)
- AMBER: rmsd over residues using ptraj Qiang Lu (Tue May 18 2004 - 19:41:16 CDT)
- Re: AMBER: Removal of rotation: Flying ice cube Carlos Simmerling (Tue May 18 2004 - 19:39:59 CDT)
- Re: AMBER: PB bomb in pb_saarc Ray Luo (Tue May 18 2004 - 19:54:21 CDT)
- Re: AMBER: rmsd over residues using ptraj Bill Ross (Tue May 18 2004 - 19:57:54 CDT)
- AMBER: Does this warning matter? (about improper torsion parameters) J. Zhang, Dr (Tue May 18 2004 - 22:04:32 CDT)
- AMBER: Reproducing the energy during restart in MD! Pradipta Bandyopadhyay (Wed May 19 2004 - 01:33:27 CDT)
- AMBER: problem in antechamber Suwipa saen-oon (Wed May 19 2004 - 03:27:24 CDT)
- Re: AMBER: Reproducing the energy during restart in MD! Carlos Simmerling (Wed May 19 2004 - 08:41:17 CDT)
- AMBER: ptraj bug? Ian Withers (Wed May 19 2004 - 09:33:38 CDT)
- Re: AMBER: Does this warning matter? (about improper torsion parameters) David A. Case (Wed May 19 2004 - 10:00:59 CDT)
- Re: AMBER: ptraj bug? Holger Gohlke (Wed May 19 2004 - 10:31:12 CDT)
- RE: AMBER: rmsd over residues using ptraj Ty Curtis (Wed May 19 2004 - 11:23:50 CDT)
- AMBER: address error Carsten Detering (Wed May 19 2004 - 12:09:12 CDT)
- Re[2]: AMBER: rmsd over residues using ptraj Qiang Lu (Wed May 19 2004 - 12:19:38 CDT)
- Re: Re[2]: AMBER: rmsd over residues using ptraj Bill Ross (Wed May 19 2004 - 13:34:08 CDT)
- Re[4]: AMBER: rmsd over residues using ptraj Qiang Lu (Wed May 19 2004 - 14:19:33 CDT)
- AMBER: Nonplanar ring systems in nucleic acid Ilyas Yildirim (Wed May 19 2004 - 15:14:14 CDT)
- Re: AMBER: Nonplanar ring systems in nucleic acid darden (Wed May 19 2004 - 16:05:59 CDT)
- Re: Re[4]: AMBER: rmsd over residues using ptraj Bill Ross (Wed May 19 2004 - 16:15:01 CDT)
- AMBER: parallel installation problem Oliver Hucke (Wed May 19 2004 - 17:17:08 CDT)
- Re: AMBER: problem in antechamber Junmei Wang (Wed May 19 2004 - 17:21:43 CDT)
- AMBER: amber7, namelist, xlf and osx Knut Langsetmo (Wed May 19 2004 - 17:47:26 CDT)
- AMBER: Amber8 on Tru64 UNIX on Alpha systems Jiten (Wed May 19 2004 - 20:28:50 CDT)
- Re: AMBER: parallel installation problem Guanglei Cui (Wed May 19 2004 - 20:54:21 CDT)
- Re: Re: AMBER: Does this warning matter? (about improper torsion parameters) J. Zhang, Dr (Wed May 19 2004 - 20:57:35 CDT)
- Re: AMBER: amber7, namelist, xlf and osx Mengjuei Hsieh (Wed May 19 2004 - 19:56:23 CDT)
- AMBER: instalation of RES anshul_at_imtech.res.in (Thu May 20 2004 - 13:22:08 CDT)
- AMBER: SHAKE in thermodynamic integration by way of riccardo nifosi (Thu May 20 2004 - 05:38:21 CDT)
- Re: AMBER: Nonplanar ring systems in nucleic acid Jiri Sponer (Thu May 20 2004 - 06:46:41 CDT)
- Re: AMBER: Nonplanar ring systems in nucleic acid Jiri Sponer (Thu May 20 2004 - 07:42:16 CDT)
- Re: AMBER: Amber8 on Tru64 UNIX on Alpha systems David A. Case (Thu May 20 2004 - 10:22:26 CDT)
- Re: AMBER: David A. Case (Thu May 20 2004 - 12:14:13 CDT)
- Re: AMBER: instalation of RES David A. Case (Thu May 20 2004 - 12:15:35 CDT)
- Re: AMBER: DEBUG and GB David A. Case (Thu May 20 2004 - 13:34:38 CDT)
- Re: AMBER: SHAKE in thermodynamic integration David A. Case (Thu May 20 2004 - 13:01:17 CDT)
- AMBER: pbsa calculation on part of the molecule S. Frank Yan (Thu May 20 2004 - 15:25:46 CDT)
- AMBER: Ammonia Lishan Yao (Thu May 20 2004 - 16:11:43 CDT)
- Re: AMBER: pbsa calculation on part of the molecule Ray Luo (Wed May 19 2004 - 15:31:50 CDT)
- AMBER: PF6- force field parameters Jiten (Thu May 20 2004 - 19:32:29 CDT)
- Re: AMBER: Amber8 on Tru64 UNIX on Alpha systems Jiten (Thu May 20 2004 - 19:49:42 CDT)
- RE: AMBER: pbsa calculation on part of the molecule & nmode analysis S. Frank Yan (Thu May 20 2004 - 20:06:11 CDT)
- Re: AMBER: Amber8 on Tru64 UNIX on Alpha systems David A. Case (Thu May 20 2004 - 20:33:14 CDT)
- Re: AMBER: pbsa calculation on part of the molecule & nmode analysis David A. Case (Thu May 20 2004 - 20:40:10 CDT)
- Re: AMBER: Amber8 on Tru64 UNIX on Alpha systems James W. Caldwell (Thu May 20 2004 - 22:02:01 CDT)
- AMBER: Problem compiling amber7 Miguel (Fri May 21 2004 - 04:15:10 CDT)
- Re: AMBER: Problem compiling amber7 David A. Case (Fri May 21 2004 - 10:23:09 CDT)
- AMBER: NHE problem Ryan Ye (Sat May 22 2004 - 00:36:44 CDT)
- AMBER: a question about Van der waals radius Xiao He (Sat May 22 2004 - 07:07:05 CDT)
- Re: AMBER: a question about Van der waals radius Jiri Sponer (Sat May 22 2004 - 07:41:12 CDT)
- Re: Re: AMBER: a question about Van der waals radius Xiao He (Sat May 22 2004 - 08:55:05 CDT)
- Re: Re: AMBER: a question about Van der waals radius Jiri Sponer (Sat May 22 2004 - 09:09:46 CDT)
- Re: Re: Re: AMBER: a question about Van der waals radius Xiao He (Sat May 22 2004 - 09:29:56 CDT)
- Re: Re: Re: AMBER: a question about Van der waals radius Jiri Sponer (Sat May 22 2004 - 09:42:27 CDT)
- Re: Re: Re: Re: AMBER: a question about Van der waals radius Xiao He (Sat May 22 2004 - 10:01:28 CDT)
- Re: AMBER: NHE problem David A. Case (Sat May 22 2004 - 18:55:52 CDT)
- Re: AMBER: NHE problem Mengjuei Hsieh (Sat May 22 2004 - 19:30:07 CDT)
- AMBER: parallel installation problem Oliver Hucke (Sat May 22 2004 - 19:40:17 CDT)
- Re: AMBER: IGR1/grnam1 problem David A. Case (Sat May 22 2004 - 23:03:16 CDT)
- Re: AMBER: NHE problem Ryan Ye (Sun May 23 2004 - 10:19:56 CDT)
- Re: AMBER: NHE problem David A. Case (Sun May 23 2004 - 11:14:34 CDT)
- AMBER: h bond Ye Mei (Mon May 24 2004 - 01:27:37 CDT)
- Re: Re: Re: Re: Re: AMBER: a question about Van der waals radius Ye Mei (Mon May 24 2004 - 01:54:30 CDT)
- AMBER: performance of amber7/xlf/macosX 10.3 with JAC on xserve g5@2.0GHz Tru Huynh (Mon May 24 2004 - 02:45:39 CDT)
- Re: AMBER: parallel installation problem Viktor Hornak (Mon May 24 2004 - 09:38:50 CDT)
- Re: AMBER: Problem compiling amber7 Viktor Hornak (Mon May 24 2004 - 10:19:04 CDT)
- Re: AMBER: performance of amber7/xlf/macosX 10.3 with JAC on xserve g5@2.0GHz David A. Case (Mon May 24 2004 - 10:37:29 CDT)
- Re: AMBER: performance of amber7/xlf/macosX 10.3 with JAC on xserve g5@2.0GHz Mengjuei Hsieh (Mon May 24 2004 - 14:12:39 CDT)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Mon May 24 2004 - 17:34:11 CDT)
- Re: AMBER: parallel installation problem Oliver Hucke (Mon May 24 2004 - 18:57:01 CDT)
- AMBER: Free energies using Sander in Amber8 Jiten (Mon May 24 2004 - 21:52:52 CDT)
- Re: AMBER: Amber8 on Tru64 UNIX on Alpha systems Jiten (Mon May 24 2004 - 22:54:40 CDT)
- Re: AMBER: Free energies using Sander in Amber8 David A. Case (Mon May 24 2004 - 23:36:22 CDT)
- Re: AMBER: segmentation fault when running parmchk David A. Case (Mon May 24 2004 - 23:41:14 CDT)
- AMBER: IOUTFM and binary/unformatted files error Martin Mucha (Tue May 25 2004 - 02:18:44 CDT)
- Re: AMBER: Problem compiling amber7 Miguel (Tue May 25 2004 - 04:54:55 CDT)
- Re: AMBER: Problem compiling amber7 scopio (Tue May 25 2004 - 07:15:28 CDT)
- Re: AMBER: Problem compiling amber7 Andreas Svrcek-Seiler (Tue May 25 2004 - 07:21:40 CDT)
- Re: AMBER: Problem compiling amber7 Viktor Hornak (Tue May 25 2004 - 07:20:40 CDT)
- Re: AMBER: Problem compiling amber7 Joachim Reichelt (Tue May 25 2004 - 07:27:59 CDT)
- Re: AMBER: amber7, namelist, xlf and osx Knut Langsetmo (Tue May 25 2004 - 08:17:26 CDT)
- AMBER: Installation AMber 8: "cannot find -lU77" A. Hungie (Tue May 25 2004 - 08:21:09 CDT)
- Re: AMBER: performance of amber7/xlf/macosX 10.3 with JAC on xserve g5@2.0GHz Tru Huynh (Tue May 25 2004 - 09:31:34 CDT)
- AMBER: mm_pbsa energy decomposition error Fang, Jianwen (Tue May 25 2004 - 09:40:32 CDT)
- Re: AMBER: mm_pbsa energy decomposition error David A. Case (Tue May 25 2004 - 10:20:13 CDT)
- AMBER: Compiling AMBER MPI program using GCC/G77 compiler and MPICH on AMD OPTERON 64 Ming Lei (Tue May 25 2004 - 10:27:49 CDT)
- AMBER: Scaling nb between groups Marcin Krol (Tue May 25 2004 - 10:34:00 CDT)
- Re: AMBER: IOUTFM and binary/unformatted files error David A. Case (Tue May 25 2004 - 10:01:28 CDT)
- AMBER: ptraj Holly Freedman (Tue May 25 2004 - 11:16:42 CDT)
- RE: AMBER: ptraj Ross Walker (Tue May 25 2004 - 12:35:39 CDT)
- AMBER: Bug in babel conversion (while following the RED manual in pp.15) Ilyas Yildirim (Tue May 25 2004 - 13:00:39 CDT)
- Re: AMBER: Bug in babel conversion FyD (Tue May 25 2004 - 13:14:55 CDT)
- Re: AMBER: Compiling AMBER MPI program using GCC/G77 compiler and MPICH on AMD OPTERON 64 Scott Brozell (Tue May 25 2004 - 14:24:23 CDT)
- AMBER: A problem for compiling amber8 parallel version Chen Yongzhi (Tue May 25 2004 - 15:58:37 CDT)
- AMBER: Surface E&S Potential Mapping Ilyas Yildirim (Tue May 25 2004 - 16:14:45 CDT)
- AMBER: protein is out of the water box Feng, Hanqiao (NIH/NCI) (Tue May 25 2004 - 17:35:01 CDT)
- AMBER: Cannot read in sander bybaker_at_itsa.ucsf.edu (Tue May 25 2004 - 17:51:48 CDT)
- Re: AMBER: ptraj scopio (Tue May 25 2004 - 18:49:47 CDT)
- Re: AMBER: Compiling AMBER MPI program using GCC/G77 compiler andMPICH on AMD OPTERON 64 Jyh-Shyong Ho (Tue May 25 2004 - 19:07:34 CDT)
- Re: AMBER: ptraj Holly Freedman (Tue May 25 2004 - 19:45:24 CDT)
- Re: AMBER: Cannot read in sander David A. Case (Wed May 26 2004 - 11:14:52 CDT)
- Re: AMBER: protein is out of the water box David A. Case (Wed May 26 2004 - 11:17:00 CDT)
- AMBER: Amber 8 compilation A. Hungie (Wed May 26 2004 - 11:23:07 CDT)
- Re: AMBER: Scaling nb between groups David A. Case (Tue May 25 2004 - 15:52:30 CDT)
- Re: AMBER: A problem for compiling amber8 parallel version David A. Case (Wed May 26 2004 - 12:08:43 CDT)
- Re: AMBER: Amber 8 compilation Viktor Hornak (Wed May 26 2004 - 12:08:08 CDT)
- AMBER: types of water atom Gustavo Pierdominici Sottile (Wed May 26 2004 - 12:06:16 CDT)
- Re: AMBER: types of water atom Piotr Cieplak (Wed May 26 2004 - 12:28:17 CDT)
- Re: AMBER: ptraj Holly Freedman (Wed May 26 2004 - 12:30:07 CDT)
- AMBER: amber 8 under windows XP Adrian E. Roitberg (Wed May 26 2004 - 13:50:02 CDT)
- RE: AMBER: amber 8 under windows XP Ross Walker (Wed May 26 2004 - 14:03:54 CDT)
- Re: AMBER: amber 8 under windows XP David A. Case (Wed May 26 2004 - 15:07:05 CDT)
- Re: AMBER: amber 8 under windows XP Piotr Cieplak (Wed May 26 2004 - 17:08:38 CDT)
- Re: AMBER: Cannot read in sander bybaker_at_itsa.ucsf.edu (Wed May 26 2004 - 19:47:30 CDT)
- RE: AMBER: Cannot read in sander Ross Walker (Wed May 26 2004 - 20:08:48 CDT)
- AMBER: xleap solvatebox problem Tomas Kubar (Thu May 27 2004 - 07:33:44 CDT)
- AMBER: antechamber: atomtype assignment of cc/cd etc pairs in GAFF / creating atom type definition file Kamp, Marc vander (Thu May 27 2004 - 08:01:13 CDT)
- Re: AMBER: amber 8 under windows XP Adrian E. Roitberg (Thu May 27 2004 - 08:09:51 CDT)
- Re: AMBER: Cannot read in sander David A. Case (Thu May 27 2004 - 10:11:03 CDT)
- Re: AMBER: amber 8 under windows XP David A. Case (Thu May 27 2004 - 10:34:50 CDT)
- Re: AMBER: xleap solvatebox problem David A. Case (Thu May 27 2004 - 10:42:48 CDT)
- AMBER: pdb in RED Gustavo Pierdominici Sottile (Thu May 27 2004 - 12:29:44 CDT)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Thu May 27 2004 - 13:01:16 CDT)
- Re: AMBER: segmentation fault when running parmchk David A. Case (Thu May 27 2004 - 13:24:27 CDT)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Thu May 27 2004 - 13:37:09 CDT)
- Re: AMBER: pdb in RED FyD (Thu May 27 2004 - 14:16:59 CDT)
- AMBER: Amber 7 (sander) use of PME Linda Prengaman (Thu May 27 2004 - 14:42:13 CDT)
- Re: AMBER: types of water atom Gustavo Pierdominici Sottile (Thu May 27 2004 - 14:28:27 CDT)
- Re: AMBER: Amber 7 (sander) use of PME Carlos Simmerling (Thu May 27 2004 - 14:47:50 CDT)
- Re: AMBER: types of water atom David A. Case (Thu May 27 2004 - 15:34:59 CDT)
- Re: AMBER: Cannot read in sander bybaker_at_itsa.ucsf.edu (Thu May 27 2004 - 15:56:12 CDT)
- AMBER: fit a 3D line to points myang (Thu May 27 2004 - 16:11:08 CDT)
- Re: AMBER: Cannot read in sander-again bybaker_at_itsa.ucsf.edu (Thu May 27 2004 - 16:22:00 CDT)
- Re: AMBER: Cannot read in sander-again Bill Ross (Thu May 27 2004 - 16:28:27 CDT)
- Re: AMBER: Cannot read in sander-again Guanglei Cui (Thu May 27 2004 - 16:28:39 CDT)
- Re: AMBER: Cannot read in sander-again bybaker_at_itsa.ucsf.edu (Thu May 27 2004 - 17:05:22 CDT)
- Re: AMBER: Cannot read in sander-again Bill Ross (Thu May 27 2004 - 17:16:56 CDT)
- RE: AMBER: Cannot read in sander Ross Walker (Thu May 27 2004 - 17:36:10 CDT)
- Re: AMBER: Cannot read in sander-again David A. Case (Thu May 27 2004 - 18:15:37 CDT)
- Re: AMBER: segmentation fault when running parmchk David A. Case (Thu May 27 2004 - 18:47:49 CDT)
- AMBER: Re: CCL:Helical parameters extraction from trajectory Peter Gannett (Fri May 28 2004 - 06:47:08 CDT)
- AMBER: problems with mpich Amber admin (Fri May 28 2004 - 09:55:25 CDT)
- Re: AMBER: problems with mpich David A. Case (Fri May 28 2004 - 11:52:56 CDT)
- Re: AMBER: problems with mpich Chen Yongzhi (Fri May 28 2004 - 13:23:48 CDT)
- Re: AMBER: types of water atom Gustavo Pierdominici Sottile (Fri May 28 2004 - 13:25:45 CDT)
- Re: AMBER: problems with mpich David A. Case (Fri May 28 2004 - 13:43:23 CDT)
- AMBER: amber on AMD 64 xhu1_at_memphis.edu (Fri May 28 2004 - 13:56:02 CDT)
- AMBER: Use of RED Gustavo Pierdominici Sottile (Fri May 28 2004 - 13:44:26 CDT)
- Re: AMBER: problems with mpich Viktor Hornak (Fri May 28 2004 - 14:00:15 CDT)
- Re: AMBER: segmentation fault when running parmchk Chutintorn Punwong (Fri May 28 2004 - 15:08:56 CDT)
- Re: AMBER: Use of RED FyD (Fri May 28 2004 - 15:20:42 CDT)
- Re: AMBER: antechamber: atomtype assignment of cc/cd etc pairs in GAFF / creating atom type definition file David A. Case (Fri May 28 2004 - 16:34:45 CDT)
- AMBER: torsion angles John (Fri May 28 2004 - 18:02:04 CDT)
- AMBER: Sander went through bybaker_at_itsa.ucsf.edu (Fri May 28 2004 - 19:19:02 CDT)
- Re: AMBER: Sander went through Rhonda Torres (Fri May 28 2004 - 19:49:44 CDT)
- AMBER: about amber8, replica exchange J. Zhang, Dr (Fri May 28 2004 - 22:45:49 CDT)
- Re: AMBER: about amber8, replica exchange Guanglei Cui (Fri May 28 2004 - 23:04:33 CDT)
- Re: AMBER: Sander went through bybaker_at_itsa.ucsf.edu (Sat May 29 2004 - 06:51:26 CDT)
- Re: AMBER: about amber8, replica exchange Carlos Simmerling (Fri May 28 2004 - 22:55:34 CDT)
- AMBER: Low frequency in quasi-harmonic analysis!! Pradipta Bandyopadhyay (Sun May 30 2004 - 04:23:50 CDT)
- AMBER: MMPBSA problem Dalmaris, John (Sun May 30 2004 - 08:22:55 CDT)
- AMBER: question about NMODE for RNA xhu1_at_memphis.edu (Sun May 30 2004 - 17:32:22 CDT)
- Re: AMBER: question about NMODE for RNA David A. Case (Sun May 30 2004 - 18:14:33 CDT)
- Re: Re: AMBER: about amber8, replica exchange J. Zhang, Dr (Sun May 30 2004 - 19:09:24 CDT)
- Re: AMBER: question about NMODE for RNA xhu1_at_memphis.edu (Sun May 30 2004 - 20:53:58 CDT)
- AMBER: program compatibility hj zou (Sun May 30 2004 - 21:07:39 CDT)
- Re: AMBER: program compatibility David A. Case (Mon May 31 2004 - 00:05:15 CDT)
- AMBER: FEP error/early termination - why? Annette Höglund (Mon May 31 2004 - 08:23:27 CDT)
- Re: AMBER: FEP error/early termination - why? David A. Case (Mon May 31 2004 - 12:33:08 CDT)
- Re: AMBER: FEP error/early termination - why? Sébastien Osborne (Mon May 31 2004 - 12:51:15 CDT)
- Re: AMBER: FEP error/early termination - why? Carlos Simmerling (Mon May 31 2004 - 12:56:24 CDT)
- Re: AMBER: FEP error/early termination - why? Sébastien Osborne (Mon May 31 2004 - 13:12:54 CDT)
- Re: AMBER: FEP error/early termination - why? Carlos Simmerling (Mon May 31 2004 - 13:21:41 CDT)
- AMBER: Install Amber8 under cygwin Seonah Kim (Mon May 31 2004 - 20:35:16 CDT)
- AMBER: Software to visualize normal modes! Pradipta Bandyopadhyay (Mon May 31 2004 - 23:42:39 CDT)
Last message date: Thu May 05 2005 - 14:26:38 CDT
Archived on: Thu May 05 2005 - 14:30:00 CDT
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