AMBER Archive (2004)

Subject: Re: AMBER: segmentation fault when running parmchk

From: David A. Case (
Date: Thu May 27 2004 - 13:24:27 CDT

On Thu, May 27, 2004, Chutintorn Punwong wrote:

> >this is my pdb file

> >
> >and i run ../exe/antechamber -nc 1 -i jmins0.pdb -fi pdb -o jmins0.prep
> >-fo prepi -c -bcc
> >it woked fine until parmchk
> >../exe/parmchk -i jmins0.prep -f prepi -o frcmod
> >then it turned Segmentation fault

Works for me, giving a good frcmod file output. Can you say what sort of
machine/OS you are using? Is this amber8 or amber7?



================================================================== David A. Case | e-mail: Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | ================================================================== ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to To unsubscribe, send "unsubscribe amber" to