AMBER Archive (2004)

Subject: AMBER: Problem : antechamber produces no output

From: Marc Perea (marc.perea_at_uab.es)
Date: Tue May 11 2004 - 05:19:52 CDT

Dear AMBER users,

I found a problem running the following command :

shell% antechamber -i h2po4fin.pdb -fi pdb -o test.out -fo gcart

It immediately finishes and produces no output (test.out) nor any error
messages on the terminal.

Does anybody had the same or similar problem before ?

Can somebody please give me some advice on which could be the problem
and/or how to track it down ?

My amber version is 7, I compiled it using g77 in a linux 2.4 machine
(IA32)

The input file is the below one :

HEADER
REMARK Title Card Required
HETATM 1 P 1 -0.075 0.121 0.069 P
HETATM 2 O 1 -0.171 0.129 1.541 O
HETATM 3 O 1 1.492 -0.025 -0.362 O
HETATM 4 O 1 -0.638 1.172 -0.800 O
HETATM 5 O 1 -0.649 -1.330 -0.410 O
HETATM 6 H 1 -0.829 -1.894 0.352 H
HETATM 7 H 1 1.685 0.516 -1.137 H
CONECT 1 2 3 4 5
CONECT 2 1
CONECT 3 1 7
CONECT 4 1
CONECT 5 1 6
CONECT 6 5
CONECT 7 3
END

Regards,
Marc 

-- 
Marc Perea - Systems Administrator
Computational Medicine Laboratory, Bioestatistics Dept.
Universitat Autonoma de Barcelona, http://lmc.uab.es
Tel : (+34) 93 581 38 12
Fax : (+34) 93 581 23 44
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