AMBER Archive (2004)

Subject: AMBER: solvent cap and eedmeth

From: Oliver Hucke (ohucke_at_u.washington.edu)
Date: Thu May 06 2004 - 18:31:42 CDT

Dear amber users,

is it correct that a solvent cap should be used together with
"eedmeth=5", i.e. with distance dependent dielectric?

 From the streptavidin/biotin tutorial as well as from scanning the
archive of the mailing list I have this impression.

What exactly means the combinatin of e.g. "cut=12" with "eedmeth=5"?

Your help is very much appreciated,

Oliver 

-- 
_______________________________________________________________

Oliver Hucke, Dr.
                               Health Sciences Building - K418C
University of Washington      1959 NE Pacific St.
Dept. of Biochemistry         phone: (206) 685 7046
Box 357742                    fax  : (206) 685 7002
Seattle, WA 98195-7742        email: ohucke_at_u.washington.edu
_______________________________________________________________

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