AMBER Archive (2004)

Subject: Re: AMBER: problems with mpich

From: David A. Case (case_at_scripps.edu)
Date: Fri May 28 2004 - 11:52:56 CDT

On Fri, May 28, 2004, Amber admin wrote:
>
> As you suggested, I assigned a proper value to the $LOADLIB variable in
> my config.h. Then the error changes to :
>
> init.o constantph.o prn_dipoles.o \
> ../lmod/lmod.a
> /usr/local/mpich/1.2.5..12/gm-2.1.1nks2smp/smp/intel32/ssh/lib \
> ../lapack/lapack.a ../blas/blas.a ../lib/nxtsec.o ../lib/sys.a
> /usr/local/mpich/1.2.5..12/gm-2.1.1nks2smp/smp/intel32/ssh/lib: file not
> recognized: Is a directory
> make[1]: *** [sander] Error 1
> make[1]: Leaving directory `/nfs/s1r1p2/xinchen/amber8/src/sander'
> make: *** [parallel] Error 2

Did you use the "-mpi" or the "-mpich" flag? It should be the latter
for mpich, and none of this might be necessary.

As the error message above states, you are providing a directory, not a
library, in the LOADLIB variable. Study what configure does with the -mpich
flag, and try to work from there.

For the future, you should give some indication of what sort of machine and
operating system you are talking about.

....dac 

-- 

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David A. Case                     |  e-mail:      case_at_scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
La Jolla CA 92037  USA            |    http://www.scripps.edu/case
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