AMBER Archive (2004)

Subject: AMBER: tmd questions

From: hj zou (hjzou_at_iris3.simm.ac.cn)
Date: Wed May 12 2004 - 21:07:36 CDT

Dear amber users£¬
   I wanna perform a TMD simulatin in amber 7.The initial and target structures of protein are ready.But when I try to add waters by using solvatebox,they have quite different numbers of waters in total which will produce "inconsistent numbers...." error message while running TMD.So, how can add same number of waters to both initial and target proteins?
   Any suggestions are highly appreciated.
    best regards

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