AMBER Archive (2004)

Subject: AMBER: separate the longitudinal and transverse vibrations frequencies

From: xiaowei li (xl3a_at_virginia.edu)
Date: Mon May 03 2004 - 23:33:11 CDT


Dear AMBER users:
     With the nice help of David and other AMBER community members, I
now can get the normal frequencies and eigenvectors of DNA with limited
number of base pairs.
     However, I am facing a new question how to separate the
longitudinal and transverse vibrations frequencies and eigenvectors
because the outputs from AMBER mix all the frequencies and eigenvectors
together. I want to know if there is any way by which I can get the
eigenfrequencies and eigenvectors of each direction (x, y, z)
respectively. Thank you in advance.

-- 
Xiaowei Li
Department of Electrical and Computer Engineering
University of Virginia
924-3446(O)

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