AMBER Archive (2008) - Apr 2008 By DateMost recent messages
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About this archive
Starting: Tue Apr 01 2008 - 00:30:32 CDT
Ending: Wed Apr 30 2008 - 23:02:55 CDT
- AMBER: Amber 8 on Redhat 4 X86_64 yavuzturkm_at_prc.boun.edu.tr (Tue Apr 01 2008 - 00:30:32 CDT)
- Re: AMBER: memory limitation of Amber 9 David A. Case (Tue Apr 01 2008 - 00:50:41 CDT)
- AMBER: TIP5P water simulation with AMBER7 Biman Jana (Tue Apr 01 2008 - 02:14:54 CDT)
- AMBER: hybrid remd imaging Geoff Wood (Tue Apr 01 2008 - 02:47:18 CDT)
- AMBER: working with unformatted restart files in AMBER9 Vlad Cojocaru (Tue Apr 01 2008 - 08:35:57 CDT)
- AMBER: atomic posiltional fluctuation Furia Gargano (Tue Apr 01 2008 - 09:11:12 CDT)
- RE: AMBER: Protein rotating out of box Steve Spronk (Tue Apr 01 2008 - 09:55:20 CDT)
- Re: AMBER: residual dipolar couplings - alignment tensor energy Douglas Kojetin (Tue Apr 01 2008 - 10:23:59 CDT)
- Re: AMBER: residual dipolar couplings - alignment tensor energy Douglas Kojetin (Tue Apr 01 2008 - 10:53:55 CDT)
- Re: AMBER: atomic posiltional fluctuation Thomas Cheatham III (Tue Apr 01 2008 - 11:50:43 CDT)
- AMBER: Electric field on atoms in equallibrium Lishan Yao (Tue Apr 01 2008 - 11:55:39 CDT)
- Re: AMBER: Electric field on atoms in equallibrium Tom Darden (Tue Apr 01 2008 - 12:59:17 CDT)
- Re: AMBER: Electric field on atoms in equallibrium Tom Darden (Tue Apr 01 2008 - 12:59:17 CDT)
- Re: AMBER: Electric field on atoms in equallibrium Lishan Yao (Tue Apr 01 2008 - 13:21:20 CDT)
- AMBER: B-factor Furia Gargano (Tue Apr 01 2008 - 14:05:36 CDT)
- AMBER: Simulating DNA Backbone in NAB Adelene Sim (Tue Apr 01 2008 - 14:23:16 CDT)
- Re: AMBER: Electric field on atoms in equallibrium Tom Darden (Tue Apr 01 2008 - 14:26:32 CDT)
- AMBER: B-factor Furia Gargano (Tue Apr 01 2008 - 14:05:36 CDT)
- AMBER: Simulating DNA Backbone in NAB Adelene Sim (Tue Apr 01 2008 - 14:23:16 CDT)
- AMBER: B-factor Furia Gargano (Tue Apr 01 2008 - 14:05:36 CDT)
- AMBER: Simulating DNA Backbone in NAB Adelene Sim (Tue Apr 01 2008 - 14:23:16 CDT)
- AMBER: B-factor Furia Gargano (Tue Apr 01 2008 - 14:05:36 CDT)
- AMBER: Simulating DNA Backbone in NAB Adelene Sim (Tue Apr 01 2008 - 14:23:16 CDT)
- AMBER: B-factor Furia Gargano (Tue Apr 01 2008 - 14:05:36 CDT)
- AMBER: Simulating DNA Backbone in NAB Adelene Sim (Tue Apr 01 2008 - 14:23:16 CDT)
- AMBER: Simulating DNA Backbone in NAB Adelene Sim (Tue Apr 01 2008 - 14:23:16 CDT)
- AMBER: Simulating DNA Backbone in NAB Adelene Sim (Tue Apr 01 2008 - 14:23:16 CDT)
- AMBER: B-factor Furia Gargano (Tue Apr 01 2008 - 14:05:36 CDT)
- AMBER: Simulating DNA Backbone in NAB Adelene Sim (Tue Apr 01 2008 - 14:23:16 CDT)
- AMBER: Simulating DNA Backbone in NAB Adelene Sim (Tue Apr 01 2008 - 14:23:16 CDT)
- AMBER: B-factor Furia Gargano (Tue Apr 01 2008 - 14:05:36 CDT)
- AMBER: LEap error message for parmBSC0 force field Cenk Andac (Tue Apr 01 2008 - 18:31:17 CDT)
- Re: AMBER: LEap error message for parmBSC0 force field Thomas Cheatham III (Tue Apr 01 2008 - 18:55:38 CDT)
- AMBER: meet problems in adding ions and waterbox Qiang Li (Wed Apr 02 2008 - 00:12:31 CDT)
- Re: AMBER: meet problems in adding ions and waterbox David A. Case (Wed Apr 02 2008 - 00:22:52 CDT)
- Re: AMBER: meet problems in adding ions and waterbox Qiang Li (Wed Apr 02 2008 - 01:12:13 CDT)
- AMBER: LJ parameters aneesh cna (Wed Apr 02 2008 - 06:46:22 CDT)
- Re: AMBER: Protein rotating out of box Lars Skjærven (Wed Apr 02 2008 - 07:36:20 CDT)
- AMBER: REMD simulation error Guillaume Renvez (Wed Apr 02 2008 - 07:47:20 CDT)
- RE: AMBER: Protein rotating out of box Steve Spronk (Wed Apr 02 2008 - 08:13:12 CDT)
- Re: AMBER: meet problems in adding ions and waterbox David A. Case (Wed Apr 02 2008 - 11:37:05 CDT)
- AMBER: ANNOUNCE: Release of AmberTools, version 1.0 David A. Case (Wed Apr 02 2008 - 11:49:20 CDT)
- Re: AMBER: Protein rotating out of box Thomas Cheatham III (Wed Apr 02 2008 - 11:54:46 CDT)
- Re: AMBER: B-factor Thomas Cheatham III (Wed Apr 02 2008 - 12:18:18 CDT)
- Re: AMBER: working with unformatted restart files in AMBER9 Thomas Cheatham III (Wed Apr 02 2008 - 12:26:00 CDT)
- Re: AMBER: LJ parameters Thomas Steinbrecher (Wed Apr 02 2008 - 12:31:57 CDT)
- Re: AMBER: Protein rotating out of box Qiang Li (Wed Apr 02 2008 - 12:35:04 CDT)
- Re: AMBER: Nmode segmentation fault David A. Case (Wed Apr 02 2008 - 12:50:09 CDT)
- Re: AMBER: Regarding SHAKE David A. Case (Wed Apr 02 2008 - 12:54:59 CDT)
- Re: AMBER: residual dipolar couplings - alignment tensor energy David A. Case (Wed Apr 02 2008 - 12:53:38 CDT)
- AMBER: ptraj / covariance / quasiharmonic approximation / entropy Seth Lilavivat (Wed Apr 02 2008 - 14:18:55 CDT)
- Re: AMBER: Protein rotating out of box Lars Skjærven (Wed Apr 02 2008 - 14:17:23 CDT)
- Re: AMBER: Simulating DNA Backbone in NAB David A. Case (Wed Apr 02 2008 - 15:24:25 CDT)
- Re: AMBER: multiple dihedral restraints using group David A. Case (Wed Apr 02 2008 - 15:44:20 CDT)
- Re: AMBER: Protein rotating out of box Lars Skjærven (Wed Apr 02 2008 - 16:01:54 CDT)
- Re: AMBER: ptraj / covariance / quasiharmonic approximation / entropy Chris Moth (Wed Apr 02 2008 - 16:09:14 CDT)
- Re: AMBER: mm-pbsa multiple trajectory approach? Chris Moth (Wed Apr 02 2008 - 16:18:06 CDT)
- Re: AMBER: AMBER 9 testing Taufik Al-Sarraj (Wed Apr 02 2008 - 21:36:57 CDT)
- Re: AMBER: LJ parameters aneesh cna (Thu Apr 03 2008 - 06:30:39 CDT)
- Re: AMBER: LEap error message for parmBSC0 force field Cenk Andac (Thu Apr 03 2008 - 07:52:37 CDT)
- Re: AMBER: LEap error message for parmBSC0 force field Alberto Perez (Thu Apr 03 2008 - 09:00:09 CDT)
- AMBER: NAD parameters Urszula Uciechowska (Thu Apr 03 2008 - 09:30:05 CDT)
- Re: AMBER: NAD parameters David A. Case (Thu Apr 03 2008 - 10:01:46 CDT)
- RE: AMBER: NAD parameters Ross Walker (Thu Apr 03 2008 - 09:56:45 CDT)
- AMBER: dockmolecules in examples directory of AmberTools-1.0 M. L. Dodson (Thu Apr 03 2008 - 10:54:50 CDT)
- AMBER: MPI run problem Qi Yan (Thu Apr 03 2008 - 11:33:19 CDT)
- AMBER: problem with Mg2+ during MD Zhenwei Lu (Thu Apr 03 2008 - 11:48:13 CDT)
- AMBER: mm_pbsa error rams rams (Thu Apr 03 2008 - 11:28:56 CDT)
- Re: AMBER: LEap error message for parmBSC0 force field Bill Ross (Thu Apr 03 2008 - 12:28:51 CDT)
- Re: AMBER: LEap error message for parmBSC0 force field Cenk Andac (Thu Apr 03 2008 - 13:08:58 CDT)
- AMBER: Using mdcrd files to look at minor charge changes Cooper, Matthew (Thu Apr 03 2008 - 13:45:12 CDT)
- Re: AMBER: Using mdcrd files to look at minor charge changes David A. Case (Thu Apr 03 2008 - 14:46:46 CDT)
- AMBER: Simple Minimization - Error dpandit_at_brandeis.edu (Thu Apr 03 2008 - 14:55:08 CDT)
- Re: AMBER: Simple Minimization - Error Daniel Smith (Thu Apr 03 2008 - 15:10:28 CDT)
- Re: AMBER: LEap error message for parmBSC0 force field Bill Ross (Thu Apr 03 2008 - 15:12:12 CDT)
- Re: AMBER: Simple Minimization - Error David A. Case (Thu Apr 03 2008 - 15:11:13 CDT)
- Re: AMBER: LEap error message for parmBSC0 force field Bill Ross (Thu Apr 03 2008 - 15:16:27 CDT)
- Re: AMBER: mm_pbsa error stephane acoca (Thu Apr 03 2008 - 15:21:29 CDT)
- Re: AMBER: MPI run problem David A. Case (Thu Apr 03 2008 - 15:38:38 CDT)
- AMBER: imem keyword using mmpbsa Sergio Wong (Thu Apr 03 2008 - 15:43:01 CDT)
- Re: AMBER: MPI run problem Robert Duke (Thu Apr 03 2008 - 15:57:33 CDT)
- RE: AMBER: MPI run problem Qi Yan (Thu Apr 03 2008 - 16:59:27 CDT)
- Re: AMBER: imem keyword using mmpbsa Sergio Wong (Thu Apr 03 2008 - 20:18:10 CDT)
- Re: AMBER: imem keyword using mmpbsa David A. Case (Thu Apr 03 2008 - 23:04:11 CDT)
- AMBER: ligand slips out of pocket Hannes Wallnoefer (Fri Apr 04 2008 - 02:58:29 CDT)
- AMBER: solvateOct produces strange residues compared to solvateCap Markus Kaukonen (Fri Apr 04 2008 - 03:08:53 CDT)
- AMBER: GAFF Eric Germaneau (Fri Apr 04 2008 - 03:18:03 CDT)
- Re: AMBER: GAFF Vlad Cojocaru (Fri Apr 04 2008 - 03:22:30 CDT)
- Re: AMBER: GAFF Eric Germaneau (Fri Apr 04 2008 - 03:27:07 CDT)
- Re: AMBER: GAFF Vlad Cojocaru (Fri Apr 04 2008 - 03:42:24 CDT)
- Re: AMBER: GAFF Eric Germaneau (Fri Apr 04 2008 - 09:10:31 CDT)
- AMBER: Restraintmask and Restraint_WT : Question dpandit_at_brandeis.edu (Fri Apr 04 2008 - 10:24:32 CDT)
- Re: AMBER: GAFF David A. Case (Fri Apr 04 2008 - 10:59:08 CDT)
- Re: AMBER: Restraintmask and Restraint_WT : Question Thomas Steinbrecher (Fri Apr 04 2008 - 11:18:17 CDT)
- Re: AMBER: mm_pbsa error Scott Pendley (Fri Apr 04 2008 - 11:29:16 CDT)
- AMBER: sander.MPI setup with SGE Sasha Buzko (Fri Apr 04 2008 - 11:59:34 CDT)
- Re: AMBER: GAFF Eric Germaneau (Fri Apr 04 2008 - 12:49:40 CDT)
- AMBER: artifacts in ptraj avg output stephane acoca (Sat Apr 05 2008 - 03:46:55 CDT)
- Re: AMBER: artifacts in ptraj avg output Barbault Florent (Sat Apr 05 2008 - 04:11:37 CDT)
- Re: AMBER: artifacts in ptraj avg output stephane acoca (Sat Apr 05 2008 - 04:52:26 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Chih-Ying Lin (Sat Apr 05 2008 - 08:33:46 CDT)
- AMBER: Minimisation: cis-azobenzene parameters Chih-Ying Lin (Sat Apr 05 2008 - 08:45:34 CDT)
- RE: AMBER: sander.MPI setup with SGE Ross Walker (Sat Apr 05 2008 - 11:18:45 CDT)
- Re: AMBER: Minimisation: cis-azobenzene parameters David A. Case (Sat Apr 05 2008 - 16:11:17 CDT)
- AMBER: RE: amber help Ross Walker (Sat Apr 05 2008 - 22:25:19 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Chih-Ying Lin (Sun Apr 06 2008 - 19:33:11 CDT)
- AMBER: NAB examples Hu, Shaowen (JSC-SK)[USRA] (Mon Apr 07 2008 - 09:32:07 CDT)
- Re: AMBER: running minimisation on cis-azobenzene David A. Case (Mon Apr 07 2008 - 10:39:24 CDT)
- Re: AMBER: NAB examples David A. Case (Mon Apr 07 2008 - 10:33:26 CDT)
- RE: AMBER: NAB examples Hu, Shaowen (JSC-SK)[USRA] (Mon Apr 07 2008 - 11:09:44 CDT)
- Re: AMBER: NAB examples David A. Case (Mon Apr 07 2008 - 11:26:58 CDT)
- RE: AMBER: NAB examples Hu, Shaowen (JSC-SK)[USRA] (Mon Apr 07 2008 - 11:43:06 CDT)
- Re: AMBER: NAB examples Andreas Svrcek-Seiler (Mon Apr 07 2008 - 11:46:34 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Chih-Ying Lin (Mon Apr 07 2008 - 12:10:43 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Chih-Ying Lin (Mon Apr 07 2008 - 12:31:51 CDT)
- Re: AMBER: NAB examples David A. Case (Mon Apr 07 2008 - 12:42:34 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Thomas Steinbrecher (Mon Apr 07 2008 - 12:39:18 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Chih-Ying Lin (Mon Apr 07 2008 - 13:03:18 CDT)
- AMBER: Trans-azobenzene and cis-azobenzene Chih-Ying Lin (Mon Apr 07 2008 - 13:13:01 CDT)
- AMBER: Build a MPI NAB Hu, Shaowen (JSC-SK)[USRA] (Mon Apr 07 2008 - 15:45:53 CDT)
- Re: AMBER: sander.MPI setup with SGE Sasha Buzko (Mon Apr 07 2008 - 15:51:20 CDT)
- Re: AMBER: reproducing http://amber.scripps.edu/tutorials/advanced/tutorial6/index.htm with explicit water David A. Case (Mon Apr 07 2008 - 15:40:27 CDT)
- AMBER: how to change the force field parameters inside the prmtop file? Chih-Ying Lin (Mon Apr 07 2008 - 16:24:17 CDT)
- Re: AMBER: Build a MPI NAB David A. Case (Mon Apr 07 2008 - 16:28:54 CDT)
- Re: AMBER: how to change the force field parameters inside the prmtop file? David A. Case (Mon Apr 07 2008 - 19:05:21 CDT)
- Re: AMBER: how to change the force field parameters inside the prmtop file? Chih-Ying Lin (Mon Apr 07 2008 - 23:13:39 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Chih-Ying Lin (Mon Apr 07 2008 - 23:40:20 CDT)
- Re: AMBER: how to change the force field parameters inside the prmtop file? David A. Case (Mon Apr 07 2008 - 23:58:53 CDT)
- AMBER: restraint box dimension aneesh cna (Tue Apr 08 2008 - 05:45:20 CDT)
- RE: AMBER: Build a MPI NAB Hu, Shaowen (JSC-SK)[USRA] (Tue Apr 08 2008 - 15:19:22 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Thomas Steinbrecher (Tue Apr 08 2008 - 15:37:39 CDT)
- AMBER: Amber 9 run error Andrew Borgert (Tue Apr 08 2008 - 16:28:07 CDT)
- Re: AMBER: Build a MPI NAB David A. Case (Tue Apr 08 2008 - 16:35:41 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Junmei Wang (Tue Apr 08 2008 - 16:37:54 CDT)
- Re: AMBER: how to change the force field parameters inside the prmtop file? Chih-Ying Lin (Tue Apr 08 2008 - 16:41:38 CDT)
- Re: AMBER: running minimisation on cis-azobenzene----an electron-withdrew atom Chih-Ying Lin (Tue Apr 08 2008 - 16:45:51 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Chih-Ying Lin (Tue Apr 08 2008 - 16:51:51 CDT)
- RE: AMBER: Amber 9 run error Ross Walker (Tue Apr 08 2008 - 16:52:30 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Chih-Ying Lin (Tue Apr 08 2008 - 17:00:20 CDT)
- Re: AMBER: how to change the force field parameters inside the prmtop file? David A. Case (Tue Apr 08 2008 - 17:08:00 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Junmei Wang (Tue Apr 08 2008 - 17:11:35 CDT)
- Re: AMBER: running minimisation on cis-azobenzene Chih-Ying Lin (Tue Apr 08 2008 - 17:27:52 CDT)
- Re: AMBER: how to change the force field parameters inside the prmtop file? Chih-Ying Lin (Tue Apr 08 2008 - 17:31:27 CDT)
- Re: AMBER: how to change the force field parameters inside the prmtop file? Chih-Ying Lin (Tue Apr 08 2008 - 17:39:39 CDT)
- AMBER: anything wrong with this script Chih-Ying Lin (Tue Apr 08 2008 - 19:27:50 CDT)
- Re: AMBER: restraint box dimension David A. Case (Tue Apr 08 2008 - 19:34:05 CDT)
- AMBER: Should the two phenyl rings of the trans-azobenzene on the same plane after minimisation? Chih-Ying Lin (Tue Apr 08 2008 - 20:03:53 CDT)
- AMBER: Should the two phenyl rings of the trans-azobenzene on the same plane after minimisation? Chih-Ying Lin (Tue Apr 08 2008 - 20:09:24 CDT)
- Re: AMBER: Protein rotating out of box David A. Case (Tue Apr 08 2008 - 20:54:29 CDT)
- AMBER: converting from CNS file format Sally Pias (Wed Apr 09 2008 - 00:32:11 CDT)
- RE: AMBER: WARNING in readAmberTrajectory(): Set #7918 is corrupted (-) zachary hartman (Wed Apr 09 2008 - 09:00:45 CDT)
- RE: AMBER: Build a MPI NAB Hu, Shaowen (JSC-SK)[USRA] (Wed Apr 09 2008 - 09:12:57 CDT)
- AMBER: Estimating dielectric constant Marcelo Puiatti (Wed Apr 09 2008 - 09:42:40 CDT)
- Re: AMBER: Build a MPI NAB David A. Case (Wed Apr 09 2008 - 11:27:28 CDT)
- AMBER: Collect dihedral angles Chih-Ying Lin (Wed Apr 09 2008 - 16:35:09 CDT)
- AMBER: ASSERTion ' ier == 0 ' failed in nmode.f Qi Yan (Wed Apr 09 2008 - 18:24:08 CDT)
- AMBER: Tutorial B3- Section6 Chih-Ying Lin (Wed Apr 09 2008 - 20:30:27 CDT)
- Re: AMBER: Tutorial B3- Section6 David A. Case (Wed Apr 09 2008 - 20:46:16 CDT)
- Re: AMBER: Tutorial B3- Section6 Chih-Ying Lin (Wed Apr 09 2008 - 21:13:32 CDT)
- AMBER: Force field Parameters Chih-Ying Lin (Wed Apr 09 2008 - 21:17:51 CDT)
- Re: AMBER: ASSERTion ' ier == 0 ' failed in nmode.f David A. Case (Thu Apr 10 2008 - 00:03:14 CDT)
- Re: AMBER: Charge scheme for simulating protonated adenine prateeksha s (Thu Apr 10 2008 - 01:11:35 CDT)
- Re: AMBER: Charge scheme for simulating protonated adenine prateeksha s (Thu Apr 10 2008 - 01:19:40 CDT)
- Re: AMBER: FAD and NAD parameters Thomas Leonard (Thu Apr 10 2008 - 01:43:47 CDT)
- AMBER: tempi in Replica Exchange rebeca_at_mmb.pcb.ub.es (Thu Apr 10 2008 - 04:23:00 CDT)
- Re: AMBER: tempi in Replica Exchange Carlos Simmerling (Thu Apr 10 2008 - 10:37:46 CDT)
- AMBER: WHAM: how frequently do I need data on the system coordinates? David Cerutti (Thu Apr 10 2008 - 11:14:23 CDT)
- AMBER: Gbsa in NAB Hu, Shaowen (JSC-SK)[USRA] (Thu Apr 10 2008 - 12:04:14 CDT)
- Re: AMBER: Gbsa in NAB David A. Case (Thu Apr 10 2008 - 12:24:17 CDT)
- Re: AMBER: WHAM: how frequently do I need data on the system coordinates? John Chodera (Thu Apr 10 2008 - 12:47:57 CDT)
- Re: AMBER: solvateOct produces strange residues compared to solvateCap David A. Case (Thu Apr 10 2008 - 14:29:52 CDT)
- AMBER: Initial Equilibration dpandit_at_brandeis.edu (Thu Apr 10 2008 - 15:45:01 CDT)
- AMBER: protein-ligand complex problem Lynn (Thu Apr 10 2008 - 17:51:32 CDT)
- RE: AMBER: protein-ligand complex problem Ross Walker (Thu Apr 10 2008 - 18:50:19 CDT)
- Re: AMBER: Tutorial B3- Section6 Chih-Ying Lin (Thu Apr 10 2008 - 18:50:14 CDT)
- Re: AMBER: protein-ligand complex problem David A. Case (Thu Apr 10 2008 - 18:51:55 CDT)
- AMBER: trans-azobenzene under minimisation Chih-Ying Lin (Thu Apr 10 2008 - 19:29:37 CDT)
- RE: AMBER: Initial Equilibration Ross Walker (Thu Apr 10 2008 - 20:29:30 CDT)
- Re: AMBER: converting from CNS file format Sally Pias (Fri Apr 11 2008 - 00:04:55 CDT)
- Re: AMBER: restraint box dimension aneesh cna (Fri Apr 11 2008 - 04:56:17 CDT)
- Re: AMBER: restraint box dimension Carlos Simmerling (Fri Apr 11 2008 - 05:22:38 CDT)
- Re: AMBER: Tutorial B3- Section6 Carlos Simmerling (Fri Apr 11 2008 - 05:26:28 CDT)
- AMBER: query about Generalized Born simulation gurvisha_at_leadinvent.com (Fri Apr 11 2008 - 08:42:23 CDT)
- Re: AMBER: query about Generalized Born simulation Carlos Simmerling (Fri Apr 11 2008 - 09:15:53 CDT)
- Re: AMBER: query about Generalized Born simulation rpaduri_at_chem.wayne.edu (Fri Apr 11 2008 - 09:31:21 CDT)
- AMBER: Amber installation jacopo.sgrignani_at_unifi.it (Fri Apr 11 2008 - 08:23:24 CDT)
- RE: AMBER: Amber installation Ross Walker (Fri Apr 11 2008 - 13:09:14 CDT)
- AMBER: Imaging before HBond analysis? Evan Kelly (Fri Apr 11 2008 - 15:34:41 CDT)
- Re: AMBER: Amber installation Mengjuei Hsieh (Fri Apr 11 2008 - 16:39:48 CDT)
- Re: AMBER: Imaging before HBond analysis? Thomas Cheatham III (Fri Apr 11 2008 - 17:24:29 CDT)
- Re: AMBER: Imaging before HBond analysis? Evan Kelly (Fri Apr 11 2008 - 17:41:51 CDT)
- RE: AMBER: Amber installation Ross Walker (Fri Apr 11 2008 - 17:45:42 CDT)
- Re: AMBER: Imaging before HBond analysis? Thomas Cheatham III (Fri Apr 11 2008 - 17:52:04 CDT)
- Re: AMBER: Imaging before HBond analysis? Evan Kelly (Fri Apr 11 2008 - 18:09:32 CDT)
- AMBER: installing pmemd with fftw YangMingjun (Sun Apr 13 2008 - 08:07:44 CDT)
- Re: AMBER: installing pmemd with fftw Robert Duke (Sun Apr 13 2008 - 08:57:36 CDT)
- Re: Re: AMBER: installing pmemd with fftw YangMingjun (Sun Apr 13 2008 - 20:08:16 CDT)
- AMBER: topology file Giuseppe De Marco (Mon Apr 14 2008 - 04:38:37 CDT)
- AMBER: Error: Bond: Maximum coordination exceeded -- setting atoms pert=true overrides default limits Ted Fischer (Mon Apr 14 2008 - 07:53:42 CDT)
- AMBER: error in compilation elsize.cc snoze pa (Mon Apr 14 2008 - 11:38:07 CDT)
- Re: AMBER: error in compilation elsize.cc David A. Case (Mon Apr 14 2008 - 12:11:33 CDT)
- AMBER: ANNOUNCEMENT: release of Amber 10 David A. Case (Mon Apr 14 2008 - 12:18:40 CDT)
- Re: AMBER: error in compilation elsize.cc snoze pa (Mon Apr 14 2008 - 13:20:40 CDT)
- AMBER: loadPdb returns extra atoms Seth Lilavivat (Mon Apr 14 2008 - 13:50:32 CDT)
- AMBER: Problems compiling Amber with MKL Sasha Buzko (Mon Apr 14 2008 - 14:13:23 CDT)
- Re: AMBER: loadPdb returns extra atoms Thomas Cheatham III (Mon Apr 14 2008 - 14:19:03 CDT)
- AMBER: JavaGenes Shultz, Jack (Mon Apr 14 2008 - 14:26:25 CDT)
- AMBER: Whole System Equilibration & Pressure dpandit_at_brandeis.edu (Mon Apr 14 2008 - 15:57:54 CDT)
- RE: AMBER: Problems compiling Amber with MKL Ross Walker (Mon Apr 14 2008 - 16:32:49 CDT)
- RE: AMBER: Whole System Equilibration & Pressure Ross Walker (Mon Apr 14 2008 - 16:37:51 CDT)
- RE: AMBER: ASSERTion ' ier == 0 ' failed in nmode.f Qi Yan (Mon Apr 14 2008 - 16:50:27 CDT)
- RE: AMBER: Problems compiling Amber with MKL Sasha Buzko (Mon Apr 14 2008 - 17:25:43 CDT)
- RE: AMBER: Problems compiling Amber with MKL Sasha Buzko (Mon Apr 14 2008 - 18:24:05 CDT)
- AMBER: energy decomposition vs ala scan Sergio Wong (Mon Apr 14 2008 - 21:05:41 CDT)
- Re: AMBER: Error: Bond: Maximum coordination exceeded -- setting atoms pert=true overrides default limits David A. Case (Tue Apr 15 2008 - 00:26:45 CDT)
- Re: AMBER: Error: Bond: Maximum coordination exceeded -- setting atoms pert=true overrides default limits Ted Fischer (Tue Apr 15 2008 - 04:09:47 CDT)
- AMBER: imaging problem Marcin Krol (Tue Apr 15 2008 - 06:54:30 CDT)
- Re: AMBER: imaging problem Carlos Simmerling (Tue Apr 15 2008 - 07:22:18 CDT)
- AMBER: mmpbsa with gromacs trajectory jacopo.sgrignani_at_unifi.it (Tue Apr 15 2008 - 09:10:21 CDT)
- Re: AMBER: imaging problem Marcin Krol (Tue Apr 15 2008 - 08:16:01 CDT)
- Re: AMBER: imaging problem David Smith (Tue Apr 15 2008 - 08:30:48 CDT)
- Re: AMBER: imaging problem Marcin Krol (Tue Apr 15 2008 - 08:38:07 CDT)
- AMBER: loading pdb in leap to create parameter files Cristina Sisu (Tue Apr 15 2008 - 08:43:57 CDT)
- Re: AMBER: loading pdb in leap to create parameter files Da-Wei Li (Tue Apr 15 2008 - 08:53:06 CDT)
- RE: AMBER: Whole System Equilibration & Pressure dpandit_at_brandeis.edu (Tue Apr 15 2008 - 09:16:35 CDT)
- Re: AMBER: loading pdb in leap to create parameter files Cristina Sisu (Tue Apr 15 2008 - 09:50:12 CDT)
- Re: AMBER: questions about run MD at different pH Taufik Al-Sarraj (Tue Apr 15 2008 - 11:15:28 CDT)
- AMBER: Is it possible to run PIMD simulation with QM/MM potential in Amber10? cgji (Tue Apr 15 2008 - 10:27:08 CDT)
- RE: AMBER: Is it possible to run PIMD simulation with QM/MM potential in Amber10? Ross Walker (Tue Apr 15 2008 - 10:47:53 CDT)
- Re: AMBER: questions about run MD at different pH David A. Case (Tue Apr 15 2008 - 12:19:11 CDT)
- Re: AMBER: questions about run MD at different pH Taufik Al-Sarraj (Tue Apr 15 2008 - 15:06:39 CDT)
- AMBER: xleap segmentation fault on SaveAmberParm Brendan Duggan (Tue Apr 15 2008 - 14:15:46 CDT)
- Re: AMBER: xleap segmentation fault on SaveAmberParm Wei Zhang (Tue Apr 15 2008 - 14:32:32 CDT)
- Re: AMBER: questions about run MD at different pH David A. Case (Tue Apr 15 2008 - 15:59:27 CDT)
- Re: AMBER: xleap segmentation fault on SaveAmberParm David A. Case (Tue Apr 15 2008 - 16:00:47 CDT)
- Re: AMBER: Is it possible to run PIMD simulation with QM/MM potential in Amber10? David A. Case (Tue Apr 15 2008 - 16:01:15 CDT)
- Re: AMBER: questions about run MD at different pH Taufik Al-Sarraj (Tue Apr 15 2008 - 17:47:10 CDT)
- AMBER: Extracting the electric field (and its gradient) on particular solute atoms John Chodera (Tue Apr 15 2008 - 19:36:01 CDT)
- AMBER: PMF calculation for rate constant or binding constant? Catein Catherine (Tue Apr 15 2008 - 21:28:43 CDT)
- AMBER: PMF calculation for binding constant or rate constant? Catein Catherine (Tue Apr 15 2008 - 21:26:46 CDT)
- AMBER: leap - using default radius 1.500000 for HO3 Nina Fischer (Wed Apr 16 2008 - 04:08:59 CDT)
- AMBER: Protonation states in Constant pH Simulations Neil Bruce (Wed Apr 16 2008 - 07:54:44 CDT)
- AMBER: Distance in z dimension Age.Skjevik_at_student.uib.no (Wed Apr 16 2008 - 09:50:55 CDT)
- Re: AMBER: topology file David A. Case (Wed Apr 16 2008 - 12:45:52 CDT)
- Re: AMBER: PMF calculation for binding constant or rate constant? David A. Case (Wed Apr 16 2008 - 16:26:13 CDT)
- Re: AMBER: Extracting the electric field (and its gradient) on particular solute atoms Tom Darden (Wed Apr 16 2008 - 16:30:53 CDT)
- AMBER: Amber9 with MPICH2 failure at runtime Sasha Buzko (Wed Apr 16 2008 - 16:43:07 CDT)
- RE: AMBER: Amber9 with MPICH2 failure at runtime Ross Walker (Wed Apr 16 2008 - 17:05:26 CDT)
- Re: AMBER: Extracting the electric field (and its gradient) on particular solute atoms John Chodera (Wed Apr 16 2008 - 17:15:19 CDT)
- RE: AMBER: Amber9 with MPICH2 failure at runtime Sasha Buzko (Wed Apr 16 2008 - 17:43:12 CDT)
- RE: AMBER: Amber9 with MPICH2 failure at runtime Ross Walker (Wed Apr 16 2008 - 18:47:03 CDT)
- RE: AMBER: Amber9 with MPICH2 failure at runtime Sasha Buzko (Wed Apr 16 2008 - 19:06:14 CDT)
- Re: AMBER: Amber9 with MPICH2 failure at runtime David A. Case (Wed Apr 16 2008 - 19:26:05 CDT)
- Re: AMBER: Amber9 with MPICH2 failure at runtime Sasha Buzko (Wed Apr 16 2008 - 19:40:09 CDT)
- RE: AMBER: Amber9 with MPICH2 failure at runtime Ross Walker (Wed Apr 16 2008 - 23:25:19 CDT)
- Re: AMBER: Amber9 with MPICH2 failure at runtime Sasha Buzko (Wed Apr 16 2008 - 23:49:01 CDT)
- AMBER: xLeap unit editor "seg fault" inonshar_at_post.tau.ac.il (Thu Apr 17 2008 - 00:49:01 CDT)
- AMBER: Scale LJ parameters fatima.chami_at_durham.ac.uk (Thu Apr 17 2008 - 06:20:40 CDT)
- AMBER: Accessing Equilibration Results dpandit_at_brandeis.edu (Thu Apr 17 2008 - 08:29:35 CDT)
- AMBER: uccabke_at_ucl.ac.uk (Thu Apr 17 2008 - 10:02:06 CDT)
- AMBER: H atom names in Amber David A. Case (Thu Apr 17 2008 - 10:16:19 CDT)
- Re: AMBER: H atom names in Amber uccabke_at_ucl.ac.uk (Thu Apr 17 2008 - 10:49:57 CDT)
- AMBER: Performance issues on Ethernet clusters Sasha Buzko (Thu Apr 17 2008 - 13:20:52 CDT)
- Re: AMBER: Performance issues on Ethernet clusters David A. Case (Thu Apr 17 2008 - 14:02:45 CDT)
- Re: AMBER: Da-Wei Li (Thu Apr 17 2008 - 10:18:04 CDT)
- Re: AMBER: Florian Haberl (Thu Apr 17 2008 - 10:17:24 CDT)
- AMBER: Conformation search... Anthony Cruz (Thu Apr 17 2008 - 14:32:52 CDT)
- Re: AMBER: Performance issues on Ethernet clusters Robert Duke (Thu Apr 17 2008 - 15:14:32 CDT)
- AMBER: Short trajectory segments / frequent restarts causes explosion David Cerutti (Thu Apr 17 2008 - 16:04:14 CDT)
- Re: AMBER: Performance issues on Ethernet clusters Sasha Buzko (Thu Apr 17 2008 - 16:18:44 CDT)
- AMBER: SiCortex as an alternative to Ethernet and infiniband clusters Kevin Abbey (Thu Apr 17 2008 - 16:37:23 CDT)
- Re: AMBER: Short trajectory segments / frequent restarts causes explosion Robert Duke (Thu Apr 17 2008 - 16:52:55 CDT)
- Re: AMBER: SiCortex as an alternative to Ethernet and infiniband clusters Sasha Buzko (Thu Apr 17 2008 - 17:39:46 CDT)
- Re: AMBER: Scale LJ parameters David A. Case (Thu Apr 17 2008 - 19:54:43 CDT)
- Re: AMBER: xLeap unit editor "seg fault" David A. Case (Thu Apr 17 2008 - 19:53:29 CDT)
- AMBER: compile Amber9 on 64bit AMD Opteron Jeffrey (Fri Apr 18 2008 - 02:02:24 CDT)
- AMBER: nmode problem Hannes Wallnoefer (Fri Apr 18 2008 - 04:01:27 CDT)
- Re: AMBER: nmode problem Hannes Wallnoefer (Fri Apr 18 2008 - 04:44:38 CDT)
- Re: AMBER: compile Amber9 on 64bit AMD Opteron David A. Case (Fri Apr 18 2008 - 10:23:48 CDT)
- AMBER: AmberTools on OS X Leopard with Intel compilers Yu Chen (Fri Apr 18 2008 - 14:17:37 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers David A. Case (Fri Apr 18 2008 - 15:44:36 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers David A. Case (Fri Apr 18 2008 - 16:17:32 CDT)
- Re: AMBER: Error: Bond: Maximum coordination exceeded -- setting atoms pert=true overrides default limits David A. Case (Fri Apr 18 2008 - 17:00:23 CDT)
- AMBER: hydrogens are flying in replica exchange simulations Ashish Sangwai (Fri Apr 18 2008 - 18:43:01 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Carlos Simmerling (Fri Apr 18 2008 - 19:02:39 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Ashish Sangwai (Fri Apr 18 2008 - 19:28:02 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Ashish Sangwai (Fri Apr 18 2008 - 19:18:32 CDT)
- RE: AMBER: hydrogens are flying in replica exchange simulations Ross Walker (Sat Apr 19 2008 - 00:07:54 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Carlos Simmerling (Sat Apr 19 2008 - 08:49:56 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Ashish Sangwai (Sun Apr 20 2008 - 18:09:03 CDT)
- AMBER: How to add radius of an atom saurabh agrawal (Mon Apr 21 2008 - 00:45:43 CDT)
- AMBER: Average structure James Thomas (Mon Apr 21 2008 - 05:21:26 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers Yu Chen (Mon Apr 21 2008 - 09:30:10 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Adrian Roitberg (Mon Apr 21 2008 - 09:56:33 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Carlos Simmerling (Mon Apr 21 2008 - 10:10:46 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Adrian Roitberg (Mon Apr 21 2008 - 11:03:06 CDT)
- Re: AMBER: Average structure David Cerutti (Mon Apr 21 2008 - 11:12:30 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Carlos Simmerling (Mon Apr 21 2008 - 11:30:12 CDT)
- AMBER: nmode jacopo.sgrignani_at_unifi.it (Mon Apr 21 2008 - 12:38:44 CDT)
- RE: AMBER: loading pdb in leap to create parameter files Steve Spronk (Mon Apr 21 2008 - 12:04:34 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers Yu Chen (Mon Apr 21 2008 - 13:47:06 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers Scott Brozell (Mon Apr 21 2008 - 15:15:29 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers David A. Case (Mon Apr 21 2008 - 14:05:38 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers Scott Brozell (Mon Apr 21 2008 - 15:33:49 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers Yu Chen (Mon Apr 21 2008 - 14:52:16 CDT)
- AMBER: aromatic residues lost planarity during MD simulation cniu_at_ualberta.ca (Mon Apr 21 2008 - 15:18:26 CDT)
- Re: AMBER: aromatic residues lost planarity during MD simulation Carlos Simmerling (Mon Apr 21 2008 - 15:25:19 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Karl Kirschner (kkirschn) (Mon Apr 21 2008 - 10:47:37 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers David A. Case (Mon Apr 21 2008 - 15:55:26 CDT)
- Re: AMBER: nmode David A. Case (Mon Apr 21 2008 - 16:05:20 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Ashish Sangwai (Mon Apr 21 2008 - 19:37:51 CDT)
- AMBER: Can sander provide ESP with PBC? Khatcharin Siriwong (Mon Apr 21 2008 - 20:36:17 CDT)
- Re: AMBER: Can sander provide ESP with PBC? John Chodera (Mon Apr 21 2008 - 21:24:25 CDT)
- RE: AMBER: Average structure Ross Walker (Mon Apr 21 2008 - 21:27:08 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers Yu Chen (Mon Apr 21 2008 - 22:21:34 CDT)
- AMBER: How to change default radius assigned to an atom saurabh agrawal (Mon Apr 21 2008 - 23:47:14 CDT)
- Re: AMBER: How to change default radius assigned to an atom David A. Case (Tue Apr 22 2008 - 00:36:16 CDT)
- AMBER: pressure varies in constant pressure membrane simulation Vijay Manickam Achari (Tue Apr 22 2008 - 00:58:29 CDT)
- RE: AMBER: Average structure Francesco Pietra (Tue Apr 22 2008 - 02:02:23 CDT)
- AMBER: vlimit-problems after image and restart Anselm Horn (Tue Apr 22 2008 - 04:04:46 CDT)
- AMBER: matrxi dist command priya priya (Tue Apr 22 2008 - 06:37:50 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers Mike Summers (Tue Apr 22 2008 - 07:03:53 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers Mike Summers (Tue Apr 22 2008 - 07:22:18 CDT)
- AMBER: RESP charges Jena M (Tue Apr 22 2008 - 07:31:54 CDT)
- AMBER: minimization san_amber roy (Tue Apr 22 2008 - 09:01:52 CDT)
- Re: AMBER: AmberTools on OS X Leopard with Intel compilers David A. Case (Tue Apr 22 2008 - 10:13:38 CDT)
- Re: AMBER: pressure varies in constant pressure membrane simulation David A. Case (Tue Apr 22 2008 - 13:31:53 CDT)
- Re: AMBER: hydrogens are flying in replica exchange simulations Carlos Simmerling (Tue Apr 22 2008 - 13:57:11 CDT)
- AMBER: refine cyana structures! Hongyan Li (Tue Apr 22 2008 - 20:33:08 CDT)
- Re: AMBER: pressure varies in constant pressure membrane simulation Vijay Manickam Achari (Tue Apr 22 2008 - 23:10:54 CDT)
- AMBER: RE: amber tutorial A3 Ross Walker (Tue Apr 22 2008 - 23:45:29 CDT)
- RE: AMBER: vlimit-problems after image and restart Ross Walker (Tue Apr 22 2008 - 23:45:29 CDT)
- AMBER: Topology file format for Amber9 Xioling Chuang (Wed Apr 23 2008 - 00:41:32 CDT)
- AMBER: cross time correlation function fatima.chami_at_durham.ac.uk (Wed Apr 23 2008 - 07:55:28 CDT)
- AMBER: ESP on atoms (2) Khatcharin Siriwong (Wed Apr 23 2008 - 09:29:04 CDT)
- AMBER: 2D-RMSD Tom McGrory (Wed Apr 23 2008 - 10:00:57 CDT)
- Re: AMBER: How to change default radius assigned to an atom Wei Zhang (Wed Apr 23 2008 - 10:29:03 CDT)
- Re: AMBER: cross time correlation function David A. Case (Wed Apr 23 2008 - 10:55:07 CDT)
- Re: AMBER: Topology file format for Amber9 David A. Case (Wed Apr 23 2008 - 11:01:13 CDT)
- Re: AMBER: cross time correlation function fatima.chami_at_durham.ac.uk (Wed Apr 23 2008 - 12:00:43 CDT)
- Re: AMBER: cross time correlation function David A. Case (Wed Apr 23 2008 - 12:10:46 CDT)
- AMBER: Amber10 on Leopard with Intel compilers, "Undefined symbols" error Yu Chen (Wed Apr 23 2008 - 13:03:13 CDT)
- Re: AMBER: Amber10 on Leopard with Intel compilers, "Undefined symbols" error David A. Case (Wed Apr 23 2008 - 13:34:30 CDT)
- Re: AMBER: Can sander provide ESP with PBC? Thomas Steinbrecher (Wed Apr 23 2008 - 13:39:10 CDT)
- Re: AMBER: Amber10 on Leopard with Intel compilers, "Undefined symbols" error Yu Chen (Wed Apr 23 2008 - 13:50:54 CDT)
- AMBER: Tutorial B5 Chih-Ying Lin (Wed Apr 23 2008 - 17:13:56 CDT)
- Re: AMBER: Tutorial B5 Alessandro Nascimento (Wed Apr 23 2008 - 19:25:12 CDT)
- AMBER: saveamberparm taufik.alsarraj_at_utoronto.ca (Wed Apr 23 2008 - 19:34:02 CDT)
- AMBER: saveamberparm taufik.alsarraj_at_utoronto.ca (Wed Apr 23 2008 - 19:38:16 CDT)
- Re: AMBER: Tutorial B5 Chih-Ying Lin (Wed Apr 23 2008 - 20:09:23 CDT)
- Re: AMBER: Can sander provide ESP with PBC? Khatcharin Siriwong (Wed Apr 23 2008 - 20:43:12 CDT)
- RE: AMBER: Tutorial B5 Ross Walker (Wed Apr 23 2008 - 21:06:42 CDT)
- Re: RE: AMBER: Tutorial B5 Chih-Ying Lin (Wed Apr 23 2008 - 22:08:19 CDT)
- AMBER: sander & imin=5 Xioling Chuang (Thu Apr 24 2008 - 02:03:09 CDT)
- AMBER: water in the binding site MMPBSA jacopo.sgrignani_at_unifi.it (Thu Apr 24 2008 - 08:51:43 CDT)
- AMBER: pmemd: "undefined reference to `mpi_(name-varies)'" Lachele Foley (Lists) (Thu Apr 24 2008 - 09:22:42 CDT)
- Re: AMBER: saveamberparm David A. Case (Thu Apr 24 2008 - 09:58:20 CDT)
- Re: AMBER: pmemd: "undefined reference to `mpi_(name-varies)'" Robert Duke (Thu Apr 24 2008 - 10:04:31 CDT)
- Re: AMBER: pmemd: "undefined reference to `mpi_(name-varies)'" Gustavo Seabra (Thu Apr 24 2008 - 12:51:10 CDT)
- Re: AMBER: pmemd: "undefined reference to `mpi_(name-varies)'" Lachele Foley (Lists) (Thu Apr 24 2008 - 14:16:50 CDT)
- AMBER: double strand DNA break up (imaging) Seth Lilavivat (Thu Apr 24 2008 - 13:53:44 CDT)
- Re: AMBER: double strand DNA break up (imaging) Thomas Cheatham III (Thu Apr 24 2008 - 14:43:36 CDT)
- Re: AMBER: pmemd: "undefined reference to `mpi_(name-varies)'" Robert Duke (Thu Apr 24 2008 - 14:45:31 CDT)
- AMBER: How to print out the improper dihedral angles/wilson angles? Chih-Ying Lin (Thu Apr 24 2008 - 19:23:51 CDT)
- AMBER: nmode output jacopo.sgrignani_at_unifi.it (Fri Apr 25 2008 - 03:36:35 CDT)
- AMBER: query regarding loadpadb Anamika Awasthi (Fri Apr 25 2008 - 03:33:19 CDT)
- Re: AMBER: query regarding loadpadb Reena ..... (Fri Apr 25 2008 - 06:07:21 CDT)
- Re: AMBER: nmode output Lachele Foley (Lists) (Fri Apr 25 2008 - 09:09:37 CDT)
- Re: AMBER: sander & imin=5 David A. Case (Fri Apr 25 2008 - 13:38:25 CDT)
- AMBER: Si parameters for MD (AMBER9) Taufik Al-Sarraj (Fri Apr 25 2008 - 17:08:44 CDT)
- AMBER: parallel error : undefined reference to `MAIN_' Arturas Ziemys (Fri Apr 25 2008 - 16:14:59 CDT)
- AMBER: AMD Opteron: compiler recommendations? Sasha Buzko (Fri Apr 25 2008 - 16:54:57 CDT)
- Re: AMBER: AMD Opteron: compiler recommendations? Robert Duke (Fri Apr 25 2008 - 17:04:58 CDT)
- Re: AMBER: AMD Opteron: compiler recommendations? Sasha Buzko (Fri Apr 25 2008 - 17:14:19 CDT)
- Fw: Re: AMBER: AMD Opteron: compiler recommendations? Francesco Pietra (Sat Apr 26 2008 - 02:05:18 CDT)
- Re: AMBER: AMD Opteron: compiler recommendations? Francesco Pietra (Sat Apr 26 2008 - 02:01:46 CDT)
- AMBER: .... RESTARTED DUE TO LINMIN FAILURE ... saurabh agrawal (Sat Apr 26 2008 - 06:36:13 CDT)
- Re: AMBER: .... RESTARTED DUE TO LINMIN FAILURE ... Barbault Florent (Sat Apr 26 2008 - 08:13:47 CDT)
- AMBER: memory usage Ye Mei (Sat Apr 26 2008 - 08:57:44 CDT)
- AMBER: Azobenzene: dihedral angle CCNN force field parameter Chih-Ying Lin (Sat Apr 26 2008 - 14:09:03 CDT)
- Re: AMBER: AMD Opteron: compiler recommendations? Sasha Buzko (Sat Apr 26 2008 - 15:31:23 CDT)
- Re: AMBER: AMD Opteron: compiler recommendations? Francesco Pietra (Sat Apr 26 2008 - 15:56:13 CDT)
- Re: AMBER: Azobenzene: dihedral angle CCNN force field parameter Adrian Roitberg (Sat Apr 26 2008 - 16:10:25 CDT)
- Re: AMBER: AMD Opteron: compiler recommendations? Sasha Buzko (Sat Apr 26 2008 - 16:15:18 CDT)
- RE: AMBER: .... RESTARTED DUE TO LINMIN FAILURE ... Ross Walker (Sun Apr 27 2008 - 00:59:57 CDT)
- RE: AMBER: memory usage Ross Walker (Sun Apr 27 2008 - 01:07:04 CDT)
- Re: RE: AMBER: memory usage Ye Mei (Sun Apr 27 2008 - 09:52:42 CDT)
- RE: RE: AMBER: memory usage Ross Walker (Sun Apr 27 2008 - 11:45:16 CDT)
- RE: AMBER: .... RESTARTED DUE TO LINMIN FAILURE ... saurabh agrawal (Mon Apr 28 2008 - 00:18:50 CDT)
- AMBER: NMR restraints Ilyas Yildirim (Mon Apr 28 2008 - 01:53:51 CDT)
- AMBER: Read trajectories generated by CHARMM Jeffrey (Mon Apr 28 2008 - 08:06:17 CDT)
- AMBER: query regarding energy minimization Anamika Awasthi (Mon Apr 28 2008 - 08:22:24 CDT)
- Re: RE: RE: AMBER: memory usage Ye Mei (Mon Apr 28 2008 - 09:06:20 CDT)
- Re: AMBER: query regarding energy minimization rpaduri_at_chem.wayne.edu (Mon Apr 28 2008 - 09:26:25 CDT)
- Re: AMBER: query regarding energy minimization Deepangi Pandit (Mon Apr 28 2008 - 09:39:39 CDT)
- Re: AMBER: NMR restraints David A. Case (Mon Apr 28 2008 - 10:20:53 CDT)
- Re: AMBER: Read trajectories generated by CHARMM David A. Case (Mon Apr 28 2008 - 10:25:13 CDT)
- Re: RE: RE: AMBER: memory usage David A. Case (Mon Apr 28 2008 - 12:26:22 CDT)
- AMBER: Parrallel computing Chih-Ying Lin (Mon Apr 28 2008 - 19:14:10 CDT)
- Re: Re: AMBER: Read trajectories generated by CHARMM Jeffrey (Mon Apr 28 2008 - 19:58:36 CDT)
- Re: AMBER: query regarding energy minimization D.Usharani (Tue Apr 29 2008 - 00:20:29 CDT)
- RE: AMBER: Parrallel computing Ross Walker (Tue Apr 29 2008 - 01:09:44 CDT)
- RE: AMBER: query regarding energy minimization Ross Walker (Tue Apr 29 2008 - 01:16:11 CDT)
- AMBER: Charge derivation: RESP vs. antechamber Catein Catherine (Tue Apr 29 2008 - 05:21:54 CDT)
- AMBER: Charge derivation: RESP vs. antechamber Catein Catherine (Tue Apr 29 2008 - 05:21:55 CDT)
- AMBER: segmentation fault in SANDER Anamika Awasthi (Tue Apr 29 2008 - 06:44:29 CDT)
- RE: AMBER: segmentation fault in SANDER Ross Walker (Tue Apr 29 2008 - 09:15:08 CDT)
- AMBER: prmtop spec trivia Lachele Foley (Lists) (Tue Apr 29 2008 - 10:07:29 CDT)
- RE: AMBER: prmtop spec trivia Ross Walker (Tue Apr 29 2008 - 10:34:04 CDT)
- Re: AMBER: prmtop spec trivia Lachele Foley (Lists) (Tue Apr 29 2008 - 11:13:41 CDT)
- RE: AMBER: prmtop spec trivia Ross Walker (Tue Apr 29 2008 - 12:55:02 CDT)
- Re: AMBER: prmtop spec trivia Lachele Foley (Lists) (Tue Apr 29 2008 - 13:25:53 CDT)
- Re: AMBER: prmtop spec trivia David A. Case (Tue Apr 29 2008 - 13:58:30 CDT)
- Re: AMBER: prmtop spec trivia Lachele Foley (Lists) (Tue Apr 29 2008 - 14:21:43 CDT)
- Re: AMBER: .... RESTARTED DUE TO LINMIN FAILURE ... saurabh agrawal (Sat Apr 26 2008 - 09:15:38 CDT)
- Re: AMBER: .... RESTARTED DUE TO LINMIN FAILURE ... Barbault Florent (Tue Apr 29 2008 - 15:56:09 CDT)
- RE: AMBER: .... RESTARTED DUE TO LINMIN FAILURE ... Ross Walker (Tue Apr 29 2008 - 15:57:21 CDT)
- Re: AMBER: Charge derivation: RESP vs. antechamber David A. Case (Tue Apr 29 2008 - 18:40:40 CDT)
- AMBER: regarding segfault during energy minimization Anamika Awasthi (Wed Apr 30 2008 - 00:13:21 CDT)
- RE: AMBER: regarding segfault during energy minimization Ross Walker (Wed Apr 30 2008 - 00:40:21 CDT)
- AMBER: distance matrix command priya priya (Wed Apr 30 2008 - 04:01:24 CDT)
- AMBER: Constat area simulation gurpreet singh (Wed Apr 30 2008 - 06:23:35 CDT)
- AMBER: Dose AMBER 10 pmemd support openmpi? Hu, Shaowen (JSC-SK)[USRA] (Wed Apr 30 2008 - 08:04:28 CDT)
- AMBER: amber 9 compilation problem on IBM SP5 Andrew Emerson (Wed Apr 30 2008 - 07:44:38 CDT)
- Re: AMBER: Dose AMBER 10 pmemd support openmpi? Robert Duke (Wed Apr 30 2008 - 10:16:58 CDT)
- Re: AMBER: Dose AMBER 10 pmemd support openmpi? David A. Case (Wed Apr 30 2008 - 10:22:48 CDT)
- Re: AMBER: Dose AMBER 10 pmemd support openmpi? Robert Duke (Wed Apr 30 2008 - 10:40:44 CDT)
- AMBER: RE: amber8 files in amber9 Jena M (Wed Apr 30 2008 - 10:55:45 CDT)
- AMBER: about glycam06 WANG,YING (Wed Apr 30 2008 - 11:00:12 CDT)
- RE: AMBER: Dose AMBER 10 pmemd support openmpi? Hu, Shaowen (JSC-SK)[USRA] (Wed Apr 30 2008 - 11:07:39 CDT)
- RE: AMBER: RE: amber8 files in amber9 Ross Walker (Wed Apr 30 2008 - 11:24:49 CDT)
- AMBER: calibration of constant pH simulations Lillian Chong (Wed Apr 30 2008 - 12:17:47 CDT)
- Re: AMBER: about glycam06 Austin B. Yongye (Wed Apr 30 2008 - 12:26:44 CDT)
- Re: AMBER: calibration of constant pH simulations Adrian Roitberg (Wed Apr 30 2008 - 13:05:33 CDT)
- Re: AMBER: amber 9 compilation problem on IBM SP5 David A. Case (Wed Apr 30 2008 - 13:37:11 CDT)
- Re: AMBER: about glycam06 WANG,YING (Wed Apr 30 2008 - 14:49:46 CDT)
- Re: AMBER: about glycam06 Austin B. Yongye (Wed Apr 30 2008 - 16:47:32 CDT)
- AMBER: Cysteine sulphonic acid parameters Rima Chaudhuri (Wed Apr 30 2008 - 17:48:42 CDT)
- Re: AMBER: Cysteine sulphonic acid parameters David A. Case (Wed Apr 30 2008 - 19:06:02 CDT)
- Re: AMBER: calibration of constant pH simulations Pradipta Bandyopadhyay (Wed Apr 30 2008 - 23:02:55 CDT)
Last message date: Wed Dec 31 2008 - 22:47:27 CST
Archived on: Thu Jan 08 2009 - 16:01:47 CST
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