AMBER Archive (2008)

Subject: AMBER: Distance in z dimension

From: Age.Skjevik_at_student.uib.no
Date: Wed Apr 16 2008 - 09:50:55 CDT

Dear AMBER users,

I have simulated membrane-ligand interactions. For comparisons, it
would been useful to visualize the distance in the z dimension only
from the ligand to the bilayer center. The distance function in ptraj
would have been perfect for this purpose had it not been for the fact
that all three dimensions are considered. Is it possible to use ptraj
for this purpose?

Best regards,

Åge Skjevik, Department of Biomedicine, University of Bergen, Norway
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