AMBER Archive (2008)

Subject: AMBER: query regarding loadpadb

From: Anamika Awasthi (aawasthi28_at_gmail.com)
Date: Fri Apr 25 2008 - 03:33:19 CDT

Dear Amber,

 I just started to use AMBER. I am using serial version of AMBER 9.
my protein is hexamer and having residues 1938
I loaded my PDB file, it was showing total atoms in file 15126
then it was showing "Leap added 15504 missing atoms according to residue
templates"
                                      6 Heavy
                                    15498 H / lone pairs
then I gave check command
its showing warning 22
unit is OK

please, tell me if my job is proper or not and what I should analyze.

 Thanks in advance
    Anamika

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