AMBER Archive (2008)

Subject: Re: AMBER: AmberTools on OS X Leopard with Intel compilers

From: Yu Chen (chen_at_hhmi.umbc.edu)
Date: Mon Apr 21 2008 - 22:21:34 CDT

>>
>> Now the test part, lots of them passed, althought quite few of them failed
>> too. They failed with "Bus error" messages. Like antechamber/c60, and
>> everything in sleap/ directory. No output file had been generated.
>
> The c60 failure has been seen before. We have not had reports of sleap
> failing. But the problem is that very few Amberites use Macs. I am suppposed
> to get a login on your machine (or one like it) soon, and I will look into
> this at this point.

After Dr. Zhang Wei's patch for the gleap, everything except c60
passed! Maybe we could ignore c60 for now. I will check with Dr. Summers.

>
> It might be good if you could post the results of "icc -V" and "gcc
> --version". That way, we will know whether we are testing something relevant
> to your environment.

icc -V:
Intel(R) C Compiler for applications running on Intel(R) 64, Version 10.1
Build 20080312 Package ID: m_cc_p_10.1.014

gcc --version:
gcc (GCC) 4.3.0

Thank you,
Best regards,

Chen

>
> Also, lots of people are downloading AmberTools, so other Mac users will
> probably be able to chime in soon.
>
> ...regards...dac
>
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===========================================
Yu Chen
Howard Hughes Medical Institute
Chemistry Building, Rm 182
University of Maryland at Baltimore County
1000 Hilltop Circle
Baltimore, MD 21250

phone: (410)455-1728 (primary)
         (410)455-6347 (secondary)
fax: (410)455-1174
email: chen_at_hhmi.umbc.edu
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