AMBER Archive (2008)

Subject: Re: AMBER: AmberTools on OS X Leopard with Intel compilers

From: Yu Chen (chen_at_hhmi.umbc.edu)
Date: Mon Apr 21 2008 - 14:52:16 CDT

>> ld: warning in /mfslab/software/amber/v10/lib/libpdb.a, file is not of
>> required architecture
>
> This sounds like you did not completely remove the compiled objects from the
> earlier compiliations. (This may be the fault of the "clean" target.)
> Make sure you do "make -f Makefile_at clean" in $AMBERHOME/src; also, go
> to the $AMBERHOME/lib directory, and remove any files that might also remain
> there. Then, try your recompilation.
>

Yeah, the "clean" did not really clean out everything, left some libs
in the "lib" dir, have to remove them manually. After delete all of them,
the compiling finished.

Now the test part, lots of them passed, althought quite few of them failed
too. They failed with "Bus error" messages. Like antechamber/c60, and
everything in sleap/ directory. No output file had been generated.

Scott, I will try the debug thing on icc later, thanks.

Best
Chen

> ...good luck...dac
>
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===========================================
Yu Chen
Howard Hughes Medical Institute
Chemistry Building, Rm 182
University of Maryland at Baltimore County
1000 Hilltop Circle
Baltimore, MD 21250

phone: (410)455-1728 (primary)
         (410)455-6347 (secondary)
fax: (410)455-1174
email: chen_at_hhmi.umbc.edu
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