AMBER Archive (2008)

Subject: AMBER: mmpbsa with gromacs trajectory

From: jacopo.sgrignani_at_unifi.it
Date: Tue Apr 15 2008 - 09:10:21 CDT

Dear amber users,
I would like to perform an MM-PBSA calculation using amber, but I have
same gromacs trajectories.
Somebody suggested me to use a pdb (created with gromacs) to create a
mdrcd trajectory with ptraj, but a found a lot of problems to do it.
Are there other strategies to perform this calculation?
Thanks a lot

Jacopo
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