AMBER Archive (2008)

Subject: Re: AMBER: NAB examples

From: David A. Case (case_at_scripps.edu)
Date: Mon Apr 07 2008 - 11:26:58 CDT

On Mon, Apr 07, 2008, Hu, Shaowen (JSC-SK)[USRA] wrote:

> I compiled with nobintraj option. But the file I obtained is not
> readable as AMBER.

NAB writes trajectories in "binpos" format. This is really kind of obsolete,
and should be changed. But for now, you should be able to use ptraj to read
in and analyze these trajectories, or to convert them to some other format.

...good luck...dac

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